PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g019550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 194aa    MW: 20893.2 Da    PI: 9.5683
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g019550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.42e-184680135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++
  Csa01g019550.1 46 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQ 80
                    *********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.09E-123979No hitNo description
PROSITE profilePS5011412.2024076IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-114095IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-154480IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.74E-114579No hitNo description
PfamPF003203.5E-164680IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404671IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSERSEETKT KLDSAGELSD VDNENCSSSG SGGGGSSSSG DTKRTCVDCG TIRTPLWRGG  60
PAGPKSLCNA CGIKSRKKRQ AALGVRSEEK KKIKKSNQIS SNDLNLEDRN VKKSNKDEDE  120
DDDHKSSNHS KTTTSSSSNN NDNKGVSKFL DLGFKVPVMK RSAVEKKRLW RKLGEEERAA  180
VLLMALSCSS VYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g019550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291785e-93AK229178.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-46-O07.
GenBankBT0108445e-93BT010844.1 Arabidopsis thaliana At3g16870 mRNA, complete cds.
GenBankBT0126115e-93BT012611.1 Arabidopsis thaliana At1g35180 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504756.11e-136PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB51e-86GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A384L5444e-84A0A384L544_ARATH; GATA17
TrEMBLQ0WPA14e-84Q0WPA1_ARATH; Uncharacterized protein At3g16870
STRINGXP_010504756.11e-136(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.11e-73GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]