PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g019550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 194aa MW: 20893.2 Da PI: 9.5683 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.4 | 2e-18 | 46 | 80 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++ Csa01g019550.1 46 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQ 80 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.09E-12 | 39 | 79 | No hit | No description |
PROSITE profile | PS50114 | 12.202 | 40 | 76 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.4E-11 | 40 | 95 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.8E-15 | 44 | 80 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.74E-11 | 45 | 79 | No hit | No description |
Pfam | PF00320 | 3.5E-16 | 46 | 80 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 46 | 71 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSERSEETKT KLDSAGELSD VDNENCSSSG SGGGGSSSSG DTKRTCVDCG TIRTPLWRGG 60 PAGPKSLCNA CGIKSRKKRQ AALGVRSEEK KKIKKSNQIS SNDLNLEDRN VKKSNKDEDE 120 DDDHKSSNHS KTTTSSSSNN NDNKGVSKFL DLGFKVPVMK RSAVEKKRLW RKLGEEERAA 180 VLLMALSCSS VYA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g019550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229178 | 5e-93 | AK229178.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-46-O07. | |||
GenBank | BT010844 | 5e-93 | BT010844.1 Arabidopsis thaliana At3g16870 mRNA, complete cds. | |||
GenBank | BT012611 | 5e-93 | BT012611.1 Arabidopsis thaliana At1g35180 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504756.1 | 1e-136 | PREDICTED: GATA transcription factor 17-like | ||||
Swissprot | Q9LIB5 | 1e-86 | GAT17_ARATH; GATA transcription factor 17 | ||||
TrEMBL | A0A384L544 | 4e-84 | A0A384L544_ARATH; GATA17 | ||||
TrEMBL | Q0WPA1 | 4e-84 | Q0WPA1_ARATH; Uncharacterized protein At3g16870 | ||||
STRING | XP_010504756.1 | 1e-136 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12643 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16870.1 | 1e-73 | GATA transcription factor 17 |
Publications ? help Back to Top | |||
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