PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g016760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 388aa MW: 43273.6 Da PI: 4.8748 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.8e-20 | 125 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r +lg+f+taeeAa+a++aa+++++g Csa01g016760.1 125 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 174 69*******.**********954...39************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.19E-17 | 125 | 183 | No hit | No description |
SMART | SM00380 | 2.7E-38 | 125 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.54 | 125 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 125 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 125 | 183 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-11 | 126 | 137 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-13 | 126 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MCGGAIISDF IPPPRSRRVT SEFIWPDLKN KGKASKKRST KKRSDFFDLD DEFEADFQGF 60 KDDSSFDCDV DDVFGNAKPF VFAATTKPVP SPASAFVSSG STSAKKIVES DGQAEKSSKR 120 KRKNQYRGIR QRPWGKWAAE IRDPRKGSRE WLGTFDTAEE AARAYDAAAR RIRGSKAKVN 180 FPEEKKNPSI SQNRPSAKTS NLQKPVAKPN QSPTLVQQQT HLSQQYCNNS FDNMGHDSCG 240 DMSFMEEKPQ MYNNQFGLTN SFDAGGNNGY QYFSSDQGSN SFDCSEFGWS DHGPRTPEIS 300 SMLVNNNQAP YIEETNAAKK LKPNSEDGIS HNDESDDLMV YLDNALWDAP LEVEAMLGAD 360 TGALTREEEN PELWSLDEIN FMLEGDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-22 | 125 | 182 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-21 | 124 | 184 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g016760.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010501805.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
Swissprot | Q9LUM4 | 0.0 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | R0G5V1 | 0.0 | R0G5V1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010501805.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 0.0 | related to AP2 2 |