PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g016410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 407aa    MW: 45921 Da    PI: 8.0219
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g016410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-2481125145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r rks ++
  Csa01g016410.1  81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSIDQ 125
                     79***************************************9875 PP
2QLQ62.41.2e-211651237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     FT++Q+q+L++Q+l+yKy+++++PvPpeL++ i+k
  Csa01g016410.1 16 LFTPTQWQELEHQALIYKYMVSGVPVPPELIFSIRK 51
                    6*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-131551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.3641651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-161750IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.18281125IPR014977WRC domain
PfamPF088791.4E-2082122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MMSLSGSSGR TIERPLFTPT QWQELEHQAL IYKYMVSGVP VPPELIFSIR KSLDSALVSR  60
LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR  120
KSIDQNQTTT TPLTSPSLSF PNNNSPSPTL SSSSSSSSST TYSASSSSMD AYNNSNRFGV  180
GGSSSNVTRG YFNSHSLDYP YPSTSPKQQQ QPLHHASALS LHQNTNPTSQ FNVLASATDH  240
KDFRYFQGIG ERVGVGERTF FPEASRSFQD SPYHHQQPLA TTVMNDPYHH CSTTDHKIDH  300
HHTYSSSSSS QHLQHDHEQD HHHHRQQQQQ QQCFVLGADM FNKPTRSSVL ANSSRQDHQS  360
HQEEEEKDSP ESKKSLHHFF GEDWAQNKSS DSWLDLSSHS RLDTGS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g016410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026380.0AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501463.10.0PREDICTED: growth-regulating factor 5-like
SwissprotQ8L8A60.0GRF5_ARATH; Growth-regulating factor 5
TrEMBLR0I2Z10.0R0I2Z1_9BRAS; Uncharacterized protein
STRINGXP_010501463.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.10.0growth-regulating factor 5