PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g015840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29051.8 Da PI: 7.7832 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEde+lv +k+ G g+W++ +++ g+ R++k+c++rw +yl Csa01g015840.1 28 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 75 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 82 | 126 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Csa01g015840.1 82 GGITSDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 126 56699****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 19 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.503 | 23 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.93E-29 | 24 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-15 | 28 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.46E-11 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 24.087 | 76 | 130 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 79 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 83 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-11 | 85 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MMLSSCGGKK PVLSKKTTPC CTKMGMKRGP WTVEEDEILV SFIKKEGEGR WRSLPKRAGL 60 LRCGKSCRLR WMNYLRPSVK RGGITSDEED LILRLHRLLG NRWSLIAGRI PGRTDNEIKN 120 YWNTHLRKKL LRQGIDPQTH KPLDVNNIHK PEEEVSGGQN PLEPNSSSHT DTTVNSGNEA 180 SNKNSINVFG GEGNYEDFGF CYDDKFSSFL NSLINDDDDP FGNMIPISQS LQMDDCMEEI 240 VGASSSLGHD QIDKKIYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 28 | 130 | 7 | 108 | B-MYB |
1h8a_C | 8e-27 | 26 | 130 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g015840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519587 | 0.0 | AY519587.1 Arabidopsis thaliana MYB transcription factor (At3g13540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500684.1 | 0.0 | PREDICTED: transcription repressor MYB5 isoform X1 | ||||
Swissprot | Q38850 | 1e-160 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | R0G727 | 1e-163 | R0G727_9BRAS; Uncharacterized protein | ||||
STRING | XP_010500684.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-163 | myb domain protein 5 |
Publications ? help Back to Top | |||
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