PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g013850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 297aa    MW: 33532 Da    PI: 7.9554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g013850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G ++W+++++  g+ R++k+c++rw +yl
   Csa01g013850.1 24 RGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71
                     788*******************************************97 PP
2Myb_DNA-binding50.26.1e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+  +eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
   Csa01g013850.1  77 RGSINEEEEQIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120
                      677789****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-251673IPR009057Homeodomain-like
PROSITE profilePS5129417.6531971IPR017930Myb domain
SuperFamilySSF466891.96E-2822118IPR009057Homeodomain-like
SMARTSM007171.1E-122373IPR001005SANT/Myb domain
PfamPF002491.3E-152471IPR001005SANT/Myb domain
CDDcd001674.61E-112771No hitNo description
PROSITE profilePS5129425.7672126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2474126IPR009057Homeodomain-like
SMARTSM007174.9E-1576124IPR001005SANT/Myb domain
PfamPF002493.6E-1477120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MREKWEMKRD DMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG  60
KSCRLRWINY LRPDLKRGSI NEEEEQIIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS  120
CIKKKLLSQG LDPSTHNLMP SHKRSSSSSS SNSNISKSKK TTSIMKNPTD LDQTTTAFSI  180
TNINPPTTTK PNRLKSPVRT LIPSQTMIPI NDTMSSLLDD ENMIPNWSNV DEMAIHHEAP  240
MLPGDKSVVG VDDDDLNMDV LFNTPSSSAF DPDFATIFSS AMSIDFNPLD DLGWTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30241267108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g013850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0395540.0AY039554.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds.
GenBankAY1021550.0AY102155.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499400.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLD7L0J70.0D7L0J7_ARALL; Uncharacterized protein
TrEMBLR0G8B00.0R0G8B0_9BRAS; Uncharacterized protein
STRINGXP_010499400.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-170myb domain protein 67