PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g013550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YC | ||||||||
Protein Properties | Length: 270aa MW: 29645.5 Da PI: 4.5588 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 37.6 | 4.9e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ ++ +v+r ++fdfl ++v + Csa01g013550.1 1 MQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 69 899*************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.24E-18 | 1 | 71 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.9E-17 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-12 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MQADEDVGKI ALAVPVLVSK SLELFLQDLC DRTYEITLER GAKTVSSLHL KHCVERYNVF 60 DFLREVVSKV PDYGHSQGQG HGDVTMDDRS ISKRRKPITD EVNDSDEEYK KSKTQETGNA 120 KPSGRGGRGR GRGRGRGGRA AEREGLNREM ELETVTAGQP PPDDSMHPSE SSPQENEKKD 180 VDVSAASNED TKQHLQSPKE GIHFDLNSES LDLNETRLAP ATGTTSSVAT APEEYSGWPM 240 MDIGKLDPAQ LASLGKRIDE DEEDYDEEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-14 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 136 | RGRGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g013550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF462841 | 0.0 | AF462841.1 Arabidopsis thaliana At3g12480/MQC3.32 mRNA, complete cds. | |||
GenBank | AY143847 | 0.0 | AY143847.1 Arabidopsis thaliana At3g12480/MQC3.32 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499035.1 | 0.0 | PREDICTED: dr1-associated corepressor-like | ||||
TrEMBL | R0HSY7 | 1e-155 | R0HSY7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010499035.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-141 | nuclear factor Y, subunit C11 |