PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g013550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 270aa    MW: 29645.5 Da    PI: 4.5588
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g013550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC37.64.9e-121693098
           NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++adedv +i+  +Pvl+sk+ elf+ +l  r++  + e   +t+    ++ +v+r ++fdfl ++v +
  Csa01g013550.1  1 MQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 69
                    899*************************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.24E-18171IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.9E-17168IPR009072Histone-fold
PfamPF008083.1E-12154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQADEDVGKI ALAVPVLVSK SLELFLQDLC DRTYEITLER GAKTVSSLHL KHCVERYNVF  60
DFLREVVSKV PDYGHSQGQG HGDVTMDDRS ISKRRKPITD EVNDSDEEYK KSKTQETGNA  120
KPSGRGGRGR GRGRGRGGRA AEREGLNREM ELETVTAGQP PPDDSMHPSE SSPQENEKKD  180
VDVSAASNED TKQHLQSPKE GIHFDLNSES LDLNETRLAP ATGTTSSVAT APEEYSGWPM  240
MDIGKLDPAQ LASLGKRIDE DEEDYDEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127136RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g013550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4628410.0AF462841.1 Arabidopsis thaliana At3g12480/MQC3.32 mRNA, complete cds.
GenBankAY1438470.0AY143847.1 Arabidopsis thaliana At3g12480/MQC3.32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499035.10.0PREDICTED: dr1-associated corepressor-like
TrEMBLR0HSY71e-155R0HSY7_9BRAS; Uncharacterized protein
STRINGXP_010499035.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-141nuclear factor Y, subunit C11