PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa01g012910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 338aa MW: 38662.1 Da PI: 7.1877 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.4 | 1.2e-10 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 rien+ r++t+ k +++ KK +EL +L d+++++ii + Csa01g012910.1 10 RIENNQSREITLKKKITTLQKKVKELTILSDVRACLIISNP 50 9************************************9765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.1E-12 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.521 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-17 | 3 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.79E-22 | 3 | 81 | No hit | No description |
PRINTS | PR00404 | 3.0E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-9 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MPRKKVKLAR IENNQSREIT LKKKITTLQK KVKELTILSD VRACLIISNP NEGEPVVWPS 60 LETTHGLLDR FFALPKFLRD KYAMTVESYI EEETSKIQAK LTRVHNEKRR YETDEMMNQL 120 QERHINIADL NLSERYALLS FSREKILSYR RHLNEQFPPL PDLATGNNQD EATRRISINA 180 LMENESHYLI DQWVSPLNPP ILGMDPNPRS YCPYQGSSSK GNHHLEMDPV CPQMVTSYGL 240 LGSVSPPSQH HNMNVNPMMV MNPPRQYPFD IMSCDVGVNE EGNNISNSQF YMSNNIIIPT 300 NAGLHQEPQM MAFDGLHGSV SQPSQHHNPM MVMNPPR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa01g012910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010464888.1 | 0.0 | PREDICTED: uncharacterized protein LOC104745375 | ||||
TrEMBL | A0A178VQF2 | 2e-89 | A0A178VQF2_ARATH; AGL48 | ||||
TrEMBL | Q9XEF1 | 2e-89 | Q9XEF1_ARATH; AGAMOUS-like 48 | ||||
STRING | XP_010464888.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40210.1 | 2e-81 | AGAMOUS-like 48 |