PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g012670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 328aa MW: 36770.6 Da PI: 7.645 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.2 | 1.2e-31 | 91 | 201 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k ltpsdv+k++rlv+pk++ae++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F+ Csa01g012670.1 91 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnnggggddVATSEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQ 185 99***************************9999988774445699************************************************** PP E-SS.SEE..EEEEE-S CS B3 84 ldgr.sefelvvkvfrk 99 ++ r + +l+++++r+ Csa01g012670.1 186 RH-RfDLHRLFIGWRRR 201 65.44788889999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-12 | 24 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-8 | 32 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-40 | 81 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-30 | 88 | 202 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.20E-28 | 90 | 192 | No hit | No description |
Pfam | PF02362 | 7.0E-29 | 91 | 201 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.267 | 91 | 202 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-24 | 91 | 202 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSVNHTYHNT LSLQQQQHMH HQNDVAVAQR ESLFEKSLTP SDVGKLNRLV IPKQHAEKYF 60 PLNNNGGGGD DQQQHMHHQN DVAVAQRESL FEKSLTPSDV GKLNRLVIPK QHAEKYFPLN 120 NNGGGGDDVA TSEKGMLLSF EDESGKCWKF RYSYWNSSQS YVLTKGWSRY VKDKHLDAGD 180 VVFFQRHRFD LHRLFIGWRR RGEASSSPAV SVVSQEALVN TTAYWSGLTT PYRQVHASTT 240 YPNIHHEYSH YGAVADHQAR STSTAVAGSS RTVRLFGVNL ECHGDAVEPP ARTDGYNGQH 300 IYYYSTPHPM NLSFAGEALE QVGDGRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-49 | 84 | 201 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-49 | 84 | 201 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g012670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441076 | 0.0 | AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene). | |||
GenBank | AK175281 | 0.0 | AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486825.1 | 1e-173 | PREDICTED: B3 domain-containing protein At3g11580-like | ||||
Swissprot | Q8RYD3 | 1e-163 | Y3158_ARATH; B3 domain-containing protein At3g11580 | ||||
TrEMBL | D7LAP4 | 1e-165 | D7LAP4_ARALL; Uncharacterized protein | ||||
STRING | XP_010486825.1 | 1e-173 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.1 | 1e-159 | B3 family protein |
Publications ? help Back to Top | |||
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