PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g012190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 247aa    MW: 27772.8 Da    PI: 8.7235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g012190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +lv ++k++G g+W + a++ g+ R++ +c++rw +yl
   Csa01g012190.1 14 KGEWTAEEDMKLVAYIKEHGLGNWGLLAKRAGLQRCGRSCRLRWMNYL 61
                     799*******************************************97 PP

2Myb_DNA-binding48.91.5e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T++E+  +++ +++lG++ W+ Ia+ ++ +Rt+ ++k++w++ 
   Csa01g012190.1  67 RSKFTPQEENEIIKFHALLGNR-WAVIAKQIP-NRTDHDIKNHWNSC 111
                      789*******************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.255961IPR017930Myb domain
SuperFamilySSF466894.4E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002495.8E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231568IPR009057Homeodomain-like
CDDcd001679.44E-121661No hitNo description
PROSITE profilePS5129424.47262116IPR017930Myb domain
SMARTSM007172.8E-1466114IPR001005SANT/Myb domain
PfamPF002491.0E-1467111IPR001005SANT/Myb domain
CDDcd001671.08E-969109No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2369116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRMTWFDVD GMKKGEWTAE EDMKLVAYIK EHGLGNWGLL AKRAGLQRCG RSCRLRWMNY  60
LRPGIKRSKF TPQEENEIIK FHALLGNRWA VIAKQIPNRT DHDIKNHWNS CLKKRLAKQR  120
IDPMTHEPTF LTVDEATSYP TTLPSPTPST SSSSSSFSST GSARLLNKLA AGIASRKYIL  180
DRIKMVILSE QPGEASDKEK MLITMDEKDL IACFMDIDEK LSTASFCDDS TTATLTGLVA  240
FDDFTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g012190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101180.10.0PREDICTED: transcription factor MYB80-like
SwissprotQ9LE636e-55MY106_ARATH; Transcription factor MYB106
TrEMBLR0I0D01e-134R0I0D0_9BRAS; Uncharacterized protein
STRINGXP_006298432.11e-135(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-113myb domain protein 95