PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g012070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 29496.3 Da PI: 7.4696 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.2e-13 | 5 | 71 | 23 | 95 |
.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 23 aeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++ g +e + ++l++ s +W+vk+ ++++ ltkGWk+F+ +++L++gD+vvF++dg ++v+ Csa01g012070.1 5 LRHIdGPTNEDNAVVKLRSdVSDITWQVKM--EGRR----LTKGWKKFAASHDLRVGDIVVFRHDGG--LLFHVT 71 44444333344556777766888*******..8888....***********************8763..333555 PP | |||||||
2 | B3 | 56.9 | 3.7e-18 | 116 | 209 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +++++l+++ l lp+ f +++g+ k++ +++l +e+g W++ l+ k +g+++++ GW++F+ +n+L+++D++ +kl++ +++++v++++ Csa01g012070.1 116 VARVTASNLRKDSLFLPRGFSRSNGLMKRKC-EIILLNEDGIPWKLILS-HKPDGEVYIRLGWRSFCFENRLRVNDVLSLKLVQ-TGTTPVLQLC 207 556789999***************9998765.****************4.33334599************************99.88889**999 PP -S CS B3 98 rk 99 ++ Csa01g012070.1 208 SS 209 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.2E-5 | 1 | 76 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.603 | 1 | 76 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-9 | 3 | 65 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.83E-13 | 4 | 73 | No hit | No description |
SuperFamily | SSF101936 | 2.75E-15 | 13 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-17 | 17 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 107 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-20 | 108 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.239 | 114 | 209 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-25 | 114 | 210 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.37E-19 | 114 | 208 | No hit | No description |
Pfam | PF02362 | 7.6E-17 | 116 | 209 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRFFLRHIDG PTNEDNAVVK LRSDVSDITW QVKMEGRRLT KGWKKFAASH DLRVGDIVVF 60 RHDGGLLFHV TCFGPSCCEI QYDYDDVIQI SSDSDSENNQ NIADEGSSSD HHSCFVARVT 120 ASNLRKDSLF LPRGFSRSNG LMKRKCEIIL LNEDGIPWKL ILSHKPDGEV YIRLGWRSFC 180 FENRLRVNDV LSLKLVQTGT TPVLQLCSSS TTSQNRFLTL TLKPYNLKKY KLVSEWYRES 240 EENNSRGSIQ YQTDDES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g012070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488930.1 | 1e-171 | PREDICTED: B3 domain-containing protein REM10-like | ||||
TrEMBL | R0HQ08 | 1e-117 | R0HQ08_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010488930.1 | 1e-171 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 2e-58 | B3 family protein |