PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g010870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 440aa    MW: 50049.6 Da    PI: 8.273
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g010870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.38.4e-23110214186
        trihelix   1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                     +Wt+ +v++Li a+ +++++ + +                   +kk++W++vsk+m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++
  Csa01g010870.1 110 KWTDTMVRLLIMAVFYIGDEAGLNDpidvkkkssgggggggmlQKKGKWKSVSKAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGiACRVV 204
                     7**************8888887554455556677888889999**********************************************89**** PP

        trihelix  77 stcpyfdqle 86 
                     ++  ++++++
  Csa01g010870.1 205 ENQGLLESMD 214
                     ***9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-20108240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MESNVMFSGF SPRMLSLEMP QNQQNPTVHQ FQHPHPYTNS GDQQTQPPIK QPLYPPYASA  60
PSKPKQLSPI SGGCNGDDED RGSGSGSGCN PEDSAGTDGK RKLSQWHRMK WTDTMVRLLI  120
MAVFYIGDEA GLNDPIDVKK KSSGGGGGGG MLQKKGKWKS VSKAMVEKGF SVSPQQCEDK  180
FNDLNKRYKR VNDILGKGIA CRVVENQGLL ESMDHLTPKL KDEVKKLLNS KHLFFREMCA  240
YHNSCGHLGG HDQQQPPQQN PVSVSVPVQQ NCFHSAEAGK MARIAERGEV EVESDMAEDS  300
ESESEMEESD EEEEEETKKK RRRVLTTAVK RLREEAARVM EDVGKSVWEK KEWMRRKMLE  360
VEEKKIGYEW EGVEMEKQRV KWLRYRSKKE REMEKAKLDN QRRRLEAERM VLMLRRSEIE  420
LNELQSSAKR VDPSSTATR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322KKKRRR
2319323KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g010870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480164.10.0PREDICTED: uncharacterized protein LOC104758866
TrEMBLR0HSJ60.0R0HSJ6_9BRAS; Uncharacterized protein
STRINGXP_010480164.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors