PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g009950.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 396aa MW: 42918.5 Da PI: 5.1055

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g009950.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.3e-17	57	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++ ar ++ gR++k+c++rw + Csa01g009950.1 57 KGPWSPEEDVVLSELVEKFGPRNWSLMARSIP-GRSGKSCRLRWCNQ 102 79****************************.*********985 PP
2	Myb_DNA-binding	52.9	8.7e-17	109	153	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+ Ed+ +++a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Csa01g009950.1 109 RNSFTAVEDQAIIKAHAIHGNK-WAVIAKLLP-GRTDNAIKNHWNST 153 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.274	52	107	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-30	54	150	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-15	56	105	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-16	57	102	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-24	58	110	IPR009057	Homeodomain-like
CDD	cd00167	5.83E-14	59	101	No hit	No description
SMART	SM00717	2.2E-16	108	156	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.621	108	158	IPR017930	Myb domain
Pfam	PF00249	7.2E-15	109	153	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-23	111	157	IPR009057	Homeodomain-like
CDD	cd00167	1.89E-12	111	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MEGEIGRRSG LREVQESAAI GRGDGDGDGD GDGDGGEDAA GFVEERTSGR GRKDRVKGPW 60 SPEEDVVLSE LVEKFGPRNW SLMARSIPGR SGKSCRLRWC NQLNPSLKRN SFTAVEDQAI 120 IKAHAIHGNK WAVIAKLLPG RTDNAIKNHW NSTLRRRFMD EKAKNMGAGS LVVEEDPEFD 180 RTATIASPEG ILSSGDAGHV TTPIVSPEGK EATSMEMPEE QQCVEKTNGE GISRQDGNPP 240 TLFRPVARLS SFNNAYNHME GSSSPHIQDK NQFQSSKQDT AMLRVLEGSY SEQFVPPTCG 300 NGCCSNNPVG LFQQDSLLGP DFVDYLDPPT IPSYELAAIA TDISSLAWLR SGLESSSVKA 360 MEEAAGRLRS QGSRAHQDHY LVSEQGKNIT NVLST*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MEGEIGRRSG LREVQESAAI GRGDGDGDGD GDGDGGEDAA GFVEERTSGR GRKDRVKGPW  60
SPEEDVVLSE LVEKFGPRNW SLMARSIPGR SGKSCRLRWC NQLNPSLKRN SFTAVEDQAI  120
IKAHAIHGNK WAVIAKLLPG RTDNAIKNHW NSTLRRRFMD EKAKNMGAGS LVVEEDPEFD  180
RTATIASPEG ILSSGDAGHV TTPIVSPEGK EATSMEMPEE QQCVEKTNGE GISRQDGNPP  240
TLFRPVARLS SFNNAYNHME GSSSPHIQDK NQFQSSKQDT AMLRVLEGSY SEQFVPPTCG  300
NGCCSNNPVG LFQQDSLLGP DFVDYLDPPT IPSYELAAIA TDISSLAWLR SGLESSSVKA  360
MEEAAGRLRS QGSRAHQDHY LVSEQGKNIT NVLST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-40	51	157	1	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g009950.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470301.1	0.0	PREDICTED: myb-related protein B-like
Swissprot	Q42575	0.0	MYB1_ARATH; Transcription factor MYB1
TrEMBL	D7L7T0	0.0	D7L7T0_ARALL; ATMYB1
STRING	XP_010470301.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	0.0	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]