PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g008800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 560aa    MW: 63020.2 Da    PI: 7.9074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g008800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.8e-13111152345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll++a++ +G g+Wk +a ++g  +t  +c+++++
   Csa01g008800.1 111 DWNADEEILLLEAIATYGFGNWKEVADHVG-SKTKIECRDHFN 152
                      6*****************************.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250249.1E-15939558IPR016827Transcriptional adaptor 2
SMARTSM002912.8E-74893IPR000433Zinc finger, ZZ-type
PfamPF005693.4E-75283IPR000433Zinc finger, ZZ-type
SuperFamilySSF578506.59E-1552115No hitNo description
CDDcd023352.27E-2452100No hitNo description
PROSITE profilePS5013510.6775495IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705481IPR000433Zinc finger, ZZ-type
SuperFamilySSF466894.19E-13104158IPR009057Homeodomain-like
PROSITE profilePS5129319.975107159IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.3E-11107154IPR009057Homeodomain-like
SMARTSM007176.4E-11108157IPR001005SANT/Myb domain
PfamPF002493.0E-12111153IPR001005SANT/Myb domain
CDDcd001671.56E-11112152No hitNo description
SuperFamilySSF466893.23E-14456554IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGRSKLASRP AADADLNPGK SKRKKISTGS DNAGASVPTG GEAGNERKAG LYCCNYCDKD  60
LSGLVRFKCA VCMDFDLCVE CFSVGVELSR HKNSHPYRVM DNLSFPLVTS DWNADEEILL  120
LEAIATYGFG NWKEVADHVG SKTKIECRDH FNSAYMQSPF FPLPDLSHTI GKGKEELLAM  180
SKEHDVKTEI PALARLSPKE ELPMLAEIKH KASGKEDAID QPLTALAGVK KKVNVPQAKD  240
ITKLEAAKQQ SDRSVGEKKL RLPGEKVPLV TELYGYNLKR EEFEIEHDND AEQLLADMEF  300
KDSDTDAERE QKLQVLHIYS KRLDERKRRK EFVLERNLLH PDQYEMGLSA EEKKIYKSCK  360
VFARFHSKEE HKELIKEVIE EHQILRRIQD LQEARTAGCK TASEAKRFIE EKRKKEAEES  420
LLLRLNHGAP GSIAGKTLKS PRGLPRNLQP FGSDSLSKIT PPIIYSGLDN WDVDGLLGAD  480
LLSEIVRTII FKLGEKKMCN ETRILPVHYL KMLEILTSEI KKGQIKKKSD AYSFFKVEPS  540
KVDRVYDMLI QKGIGGEST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C5e-34541677120Transcriptional adapter 2
6cw3_E5e-34541677120Transcriptional adapter 2
6cw3_G5e-34541677120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325330RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known (By similarity). ADA2 stimulates the acetyltransferase activity of GCN5 on free histones or nucleosomes, probably by opening up the promoter region. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g008800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3387690.0AF338769.1 Arabidopsis thaliana transcriptional adaptor ADA2a (ADA2a) mRNA, complete cds.
GenBankAF3602460.0AF360246.1 Arabidopsis thaliana unknown protein (At3g07740) mRNA, complete cds.
GenBankAY0400450.0AY040045.1 Arabidopsis thaliana unknown protein (At3g07740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457040.10.0PREDICTED: transcriptional adapter ADA2a-like
SwissprotQ9SFD50.0TAD2A_ARATH; Transcriptional adapter ADA2a
TrEMBLR0HKN80.0R0HKN8_9BRAS; Transcriptional adapter
STRINGXP_010457040.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM282225
Publications ? help Back to Top
  1. Hark AT, et al.
    Two Arabidopsis orthologs of the transcriptional coactivator ADA2 have distinct biological functions.
    Biochim. Biophys. Acta, 2009. 1789(2): p. 117-24
    [PMID:18929690]