PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g008710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 382aa    MW: 41886 Da    PI: 5.8494
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g008710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  Csa01g008710.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                    6*****************************65677777776 PP
2zf-B_box22.32.7e-074678436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                     +C++++ ++++  C + ++ lC++C  ++H++
  Csa01g008710.1 46 LICERCNAQPATVRCVEERVSLCQNCDWSGHNN 78
                    68*****************************87 PP
3CCT60.36.3e-21324367144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Csa01g008710.1 324 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 367
                     99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.897147IPR000315B-box-type zinc finger
CDDcd000216.10E-8447No hitNo description
SMARTSM003362.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.6744377IPR000315B-box-type zinc finger
CDDcd000211.15E-54776No hitNo description
PfamPF062031.1E-15324366IPR010402CCT domain
PROSITE profilePS5101715.338324366IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLICER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN NNNNNNNSSS SASSSPQQHK RQTISCYSGC PSSSELASIW  120
SFCLDLAGQS ICEQELGMMN IDDNNNAPTD KNCNEDNKKD VLVESSTVPE TSSAAQGNSS  180
FAKKDVGVCE DDFYGNLGMD EVDLALENYE ELFGVAFNPS EELFGHGGID SLFQKHQTAA  240
TEGGNHVQQA DSNDSFMSSK TEPIICFASK PAHSNISFSG VTGESSAGDF QECGASSSMQ  300
LSGEPPWYPP TSQDNNACSH SVTRNNAVMR YKEKKKARKF DKRVRYASRK ARADVRRRVK  360
GRFVKAGEAY DYDPLTPTRS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g008710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3169340.0AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23.
GenBankBT0294900.0BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100549.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLR0HZV40.0R0HZV4_9BRAS; Uncharacterized protein
STRINGXP_010456197.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9