PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g008360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 462aa MW: 50781.8 Da PI: 6.8902

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g008360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	273	320	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa01g008360.1 273 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 320 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.89E-10	267	324	No hit	No description
SuperFamily	SSF47459	6.02E-17	267	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	269	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-17	269	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	273	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MENELFMNAG VSQPPVMMTS PSSSSAMLDW VSSSTQPVDP SLSRNLSRDC LFWEKSTEQS 60 IFDSALSSLV SSPNSNFSGG GVAHGDNFII RELIGKLGNI GEIYGSPASN GNVSASCYAT 120 PMSSSPPPRH MMVTKPPTPL AEFSGDSGFA ERAARFSCFG SRSFNGRTNP PFPINNHVPV 180 AANEKMPRVS STPALKPLAG ESSGEISRKR KTKSKQNSPS TASPSKEVEE KEDSDPKRSK 240 KTEANEDKTK SVDDDPYKDY IHVRARRGQA TDSHSLAERV RREKISERMK LLQDLVPGCN 300 KVTGKALMLD EIINYVQSLQ RQVEFLSMKL SSVNTRLEFN MDAFMSKDLF PSGNNLMHQQ 360 VLQLDSSAET LLSDHHHNTN LQLNPKISSN NIMTPLEPSE TRSFVSHLPT LAHFTDSISQ 420 YSTFSEDDLH SIIHMGFAQN RIHELNQGPS NQVPSNMKAE L*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MENELFMNAG VSQPPVMMTS PSSSSAMLDW VSSSTQPVDP SLSRNLSRDC LFWEKSTEQS  60
IFDSALSSLV SSPNSNFSGG GVAHGDNFII RELIGKLGNI GEIYGSPASN GNVSASCYAT  120
PMSSSPPPRH MMVTKPPTPL AEFSGDSGFA ERAARFSCFG SRSFNGRTNP PFPINNHVPV  180
AANEKMPRVS STPALKPLAG ESSGEISRKR KTKSKQNSPS TASPSKEVEE KEDSDPKRSK  240
KTEANEDKTK SVDDDPYKDY IHVRARRGQA TDSHSLAERV RREKISERMK LLQDLVPGCN  300
KVTGKALMLD EIINYVQSLQ RQVEFLSMKL SSVNTRLEFN MDAFMSKDLF PSGNNLMHQQ  360
VLQLDSSAET LLSDHHHNTN LQLNPKISSN NIMTPLEPSE TRSFVSHLPT LAHFTDSISQ  420
YSTFSEDDLH SIIHMGFAQN RIHELNQGPS NQVPSNMKAE L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	211	SRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g008360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010451395.1	0.0	PREDICTED: transcription factor bHLH62 isoform X1
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	R0G587	0.0	R0G587_9BRAS; Uncharacterized protein
STRING	XP_010451395.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]