PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g007780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 138aa MW: 14749.9 Da PI: 10.4469 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 33 | 67 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt kTplWR+gp g+k+LCnaCG+++ kk++ Csa01g007780.1 33 CAICGTNKTPLWRSGPAGPKSLCNACGIRNTKKRR 67 999*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-11 | 27 | 77 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.202 | 27 | 60 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-13 | 27 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 27 | 78 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.36E-12 | 32 | 68 | No hit | No description |
Pfam | PF00320 | 1.6E-15 | 33 | 67 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 33 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MGTTSVDSIE EHSSSSSSNS NGGGISSNEK KSCAICGTNK TPLWRSGPAG PKSLCNACGI 60 RNTKKRRTVI SNRSEDKMKM KMKKKNPKLG DSLKQRLMEL GREVMMQRST TAGNKLGEDE 120 QAAVLLMALS YASSVYA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g007780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY063926 | 2e-88 | AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds. | |||
GenBank | AY084525 | 2e-88 | AY084525.1 Arabidopsis thaliana clone 110655 mRNA, complete sequence. | |||
GenBank | AY091250 | 2e-88 | AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444366.1 | 6e-96 | PREDICTED: GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 6e-66 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | D7L5Z2 | 1e-63 | D7L5Z2_ARALL; Uncharacterized protein | ||||
STRING | XP_010444297.1 | 2e-95 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 7e-58 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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