PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g007230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 179aa MW: 20160.2 Da PI: 4.1135 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59 | 8.5e-19 | 22 | 107 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ +s+ l++p ++ e+ + +kt +l+ + g+ W+v + + +++++++++GW +Fv +n+Lk+g+f+ F +dg +++ v++f Csa01g007230.1 22 Y--LSHYSSDSLMIPVSYYEHLP--RPLPKTAILMGTGGKIWKVAM--KSRQEQVYFERGWTNFVADNDLKDGEFLSFVFDG--YRRYEVSIFG 107 4..56667788********5555..55999****************..999999*************************876..4445777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-23 | 14 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.55E-19 | 16 | 106 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-21 | 16 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.944 | 16 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-21 | 18 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 19 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MASGDVLPRF FSVYFPRFFS VYLSHYSSDS LMIPVSYYEH LPRPLPKTAI LMGTGGKIWK 60 VAMKSRQEQV YFERGWTNFV ADNDLKDGEF LSFVFDGYRR YEVSIFGHGG CKEIRAAVEV 120 EEISDGSESE NNEGSLESVI LEEEEEINDA DQTKSDPDYS PDSPDTTTIS VESAEVFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 4e-23 | 17 | 111 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g007230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436894.1 | 1e-129 | PREDICTED: B3 domain-containing protein At3g06220-like | ||||
Swissprot | Q1PES7 | 8e-66 | Y3622_ARATH; B3 domain-containing protein At3g06220 | ||||
Swissprot | Q9M8K2 | 9e-65 | REM21_ARATH; B3 domain-containing protein REM21 | ||||
TrEMBL | D7L4S8 | 1e-64 | D7L4S8_ARALL; Transcriptional factor B3 family protein | ||||
TrEMBL | R0H1D4 | 2e-66 | R0H1D4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010436894.1 | 1e-128 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 1e-58 | B3 family protein |
Publications ? help Back to Top | |||
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