PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g006800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 328aa MW: 37390 Da PI: 6.6498 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.2 | 1.9e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+s+ Csa01g006800.1 10 FITNDSSRKATFKKRKKGLMKKVNELSTLCGISACAIIYSP 50 89**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.1 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.03E-23 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-18 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MTRKKVKLAF ITNDSSRKAT FKKRKKGLMK KVNELSTLCG ISACAIIYSP YDSNPEVWPS 60 NSGVQRIVSE FRTLPEMDQQ KKMVDQETFL RQRIAKASDH LRRQRKDNRE LEMTEVMFQC 120 LLGNMGMFHM NIMDLNDLGF LIEQYLKDIN RRFEILQSSG MEIGESSNAA GVVETPPMEI 180 MASTTPPTTT TNDQAGSSSS PLAAFLNPLQ QQQQQHQQFL YPSSPHVGLY EQPPSLNLNL 240 NPNYSQNQQQ WFMEMTHHQP EPLNYAVDDE QRGFLFMDDN HHDHHQPQHQ HDQQILGDSS 300 TVSTTVVTSS STIPVTNPSP TNNTWFR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFITNDSSRKATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g006800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433119.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 isoform X1 | ||||
Swissprot | Q9FJK3 | 1e-123 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | R0G6N6 | 1e-143 | R0G6N6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010433119.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-108 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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