PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g006790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 325aa    MW: 37129 Da    PI: 8.8663
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g006790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.1e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n s r+ tf kR++g++KK +ELS+LC++ ++ ii+s+
  Csa01g006790.1 10 FITNGSSRKATFKKRKKGLMKKVNELSTLCGISACAIIYSP 50
                    799*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.876149IPR002100Transcription factor, MADS-box
CDDcd002669.18E-22285No hitNo description
SuperFamilySSF554557.85E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTRKKVKLAF ITNGSSRKAT FKKRKKGLMK KVNELSTLCG ISACAIIYSP YDSNPEVWPS  60
NSCVQRIVSD FRTLPEMDQQ KKMVDQETFL RQRIAKASDH FRRLRKDNRE LQMKELMFQC  120
LIGNMGKFHM NIMDLNDLGF MIEQYLKNIN RRFEILQNSG MEIGESSNAA GAVGTTFERT  180
GSMEVMASTT PPTTTPNEAG SSSSSLAAFL NHFQQQQQHQ QFRYPSSPHV GLYEQPPSLN  240
LNLNKNYSQN QQQWFMEMMH HQPEPLNYAV DDEQRGFLFM DDHHQPQDQH QQILGDSSTV  300
STIVTSSSTI PVTNPSPTNN TWFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNGSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g006790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466902.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-117AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0G6N61e-141R0G6N6_9BRAS; Uncharacterized protein
STRINGXP_010417921.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-107AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]