PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g006430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 222aa MW: 24837.4 Da PI: 4.7388

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g006430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.1	2.1e-10	112	205	2	80
EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfv 80 +k+lt sdv+++ rl +pk+ ++eh + + + + ++t+ d++ + ++ ++ +++ g+yvl ++W k+Fv+ ++Lk+g+ + Csa01g006430.1 112 KKTLTMSDVGSQTRLLIPKEPTNEHilnylteeeiklvEDEDHLGLKITVFDSKEkTTHQLCFKRWNSAGSYVLNNNWnKDFVQRKELKAGEAI 205 6999*******************9987776666666333345556666665543222333333*********557********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.67E-14	107	211	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.01E-16	109	221	No hit	No description
Gene3D	G3DSA:2.40.330.10	9.0E-15	111	211	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF03754	1.3E-8	111	191	IPR005508	B3 domain-containing protein

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MLLFPCNGEG LAYTVPCGIR SEGLVMNTQD DTPPSSPTSP RLLELFPCES VALLDLFPCQ 60 GGEFACVVPP SVTRNETGVS LAYFRNMPGE ESDMIIATEL TVSIEADIWK IKKTLTMSDV 120 GSQTRLLIPK EPTNEHILNY LTEEEIKLVE DEDHLGLKIT VFDSKEKTTH QLCFKRWNSA 180 GSYVLNNNWN KDFVQRKELK AGEAIGLFWN PYASRLHLRV L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g006430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010468027.1	1e-140	PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBL	R0I8N3	1e-91	R0I8N3_9BRAS; Uncharacterized protein
STRING	XP_010468027.1	1e-140	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM456	9	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	6e-26	B3 family protein