PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g003470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 278aa    MW: 29523.8 Da    PI: 7.4064
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g003470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.3e-40541551101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael
  Csa01g003470.1  54 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 148
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     ++++++l
  Csa01g003470.1 149 SVVQSQL 155
                     ***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.21653155IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3954152IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MADQQRPHNT SDSRRKSLAG RRTSSQQTPT TSSLSSGGGS IAAATTTGTG TASPCGACKF  60
LRRKCVSGCI FAPHFGSDQG AARFAAVHKV FGASNVSKLL HHIPVNRRHD AVVTISYEAQ  120
ARLSDPVYGC VSTILALQQQ VASLQAELSV VQSQLINSRV AMANVMQQQT HHQQQQQQQL  180
VVMQQPEYSN NSSASTTLAG AAMNSFTVAA EAADVSYDVM APTNLEHSLP PMPPHQQSRG  240
DQHHEDEEES GADFSVAVGS TAVASEVIFP AEGFHRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-40421561112LOB family transfactor Ramosa2.1
5ly0_B4e-40421561112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g003470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBankBT0085890.0BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513804.10.0PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV31e-158LBD20_ARATH; LOB domain-containing protein 20
TrEMBLD7L1941e-158D7L194_ARALL; LOB domain protein 20
STRINGXP_010513804.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-130LOB domain-containing protein 20