PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g002940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 702aa MW: 78421.5 Da PI: 5.4657 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 25 | 79 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ +++t++q++ Le++F ++++p++++r++L ++l+L +qVk+WFqN+R++ k Csa01g002940.1 25 RTGHRHTPQQIQGLEAFFMECPHPDEAQRQQLCEELKLGLNQVKFWFQNKRTQCK 79 555789*********************************************9987 PP | |||||||
2 | START | 115.8 | 6.4e-37 | 218 | 437 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 +a +el ++ ee++Wvkss +sen+++ +++ ++ ++e +++++vv+ ++++l e +ld +W+e ++ +a+tl v+ Csa01g002940.1 218 ASAVEELKRLFFTEEQFWVKSSidgtdviDSENYEKFSNAVKKFRSmsAHVESSKDVTVVPIEATNLIEMFLDAE-KWKELFPtmvnQAKTLHVL 311 66778888888899***********999999999998777755444778************************99.99998888888******** PP CTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 86 ssg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 s ++l +m +l lsplvp R+f++vR++++ ++g w+i+dvS ++ + ++s+ ++pSg+li++++n skv w+ehv++ Csa01g002940.1 312 GSElpirencNILRVMWEQLHILSPLVPpREFMIVRCCQEISKGLWIIADVSHNVYFDFV-NASC---YKRPSGCLIQSLPNAQSKVMWIEHVEV 402 ****************************************************99998887.4555...559************************ PP -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206 + +l h +++ l++ g gak+w atl+r ce+ Csa01g002940.1 403 GHKLDtHKIFKELLSGGSGYGAKRWIATLERMCER 437 ****99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 7 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.59E-17 | 9 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.256 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.13E-16 | 24 | 82 | No hit | No description |
Pfam | PF00046 | 6.8E-16 | 26 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 39.844 | 206 | 440 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.97E-26 | 208 | 438 | No hit | No description |
CDD | cd08875 | 1.58E-85 | 211 | 436 | No hit | No description |
SMART | SM00234 | 1.2E-19 | 215 | 437 | IPR002913 | START domain |
Pfam | PF01852 | 2.3E-30 | 218 | 437 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.8E-6 | 243 | 404 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.85E-5 | 458 | 665 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MENYGSGSSC NEQYASEDSK QSGKRTGHRH TPQQIQGLEA FFMECPHPDE AQRQQLCEEL 60 KLGLNQVKFW FQNKRTQCKV QEEKAGNLSL RGQNEILKSE NEAMHEALSS VLCPDCGGPP 120 FGREERALNF QKLLLENARL KEQRDKISHF LSNMSKRLTV GGSLASVPTQ HIFDQISSYG 180 INPSTMFDPS SSFGPPTSQP IQPQLFQMDV SLLSETAASA VEELKRLFFT EEQFWVKSSI 240 DGTDVIDSEN YEKFSNAVKK FRSMSAHVES SKDVTVVPIE ATNLIEMFLD AEKWKELFPT 300 MVNQAKTLHV LGSELPIREN CNILRVMWEQ LHILSPLVPP REFMIVRCCQ EISKGLWIIA 360 DVSHNVYFDF VNASCYKRPS GCLIQSLPNA QSKVMWIEHV EVGHKLDTHK IFKELLSGGS 420 GYGAKRWIAT LERMCERMAL TSNLTLPASD WSEVIRTGEE RRRVLKLGER MIMNFNEMLT 480 MSGKVDFPQQ SKCGVRVSMR INLEAGQPRG LIVSAASSFP IPLPPVQVFD NLRKLDPRQQ 540 WDVLAYGTVV TEIARVATGS SETNCLSILR PTQEENNGKL VAEDSDKGDM LMLQDCYMDA 600 LGGMLVYAPM DMTTMDTTLT GADVEISDIP ILPSGFIISS DGRRSTVEDG GTLLTLAFQI 660 LVSGNTNRAR DVNENSVNTV STLISSTVQR IKGLLNCPDQ C* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g002940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010507998.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG8 | ||||
Swissprot | Q9M9P4 | 0.0 | HDG8_ARATH; Homeobox-leucine zipper protein HDG8 | ||||
TrEMBL | A0A178VGS8 | 0.0 | A0A178VGS8_ARATH; HDG8 | ||||
STRING | XP_010507998.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12791 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 0.0 | homeodomain GLABROUS 8 |