PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g002130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 267aa    MW: 28377.1 Da    PI: 7.9489
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g002130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.64.7e-294107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q 
  Csa01g002130.1   4 SCNGCRVLRKGCSEDCSIRPCLswiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQD 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++++++ +e
  Csa01g002130.1  99 AVDAVMKGE 107
                     999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381556.4E-1021266IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.0673109IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-234102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLSWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV DAVMKGESIT EIATDAATIG  120
QGPPLKSYDI RHNSKDDNSA AAAATGSTDL KRGKTRRAKR VAALEKQAES EGKSGGGEAS  180
HESSLSHQSE VVAAHEGESK ESESNASEVL AFSPPAAQGS GEVKLDLTLG LEPVSRAYDV  240
VPVKKRRIGV FGTCQKESTC KTELML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g002130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860610.0AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498637.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-176LBD41_ARATH; LOB domain-containing protein 41
TrEMBLR0I6Q70.0R0I6Q7_9BRAS; Uncharacterized protein
STRINGXP_010498637.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-163LOB domain-containing protein 41