PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01635s010.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HB-other
Protein Properties Length: 546aa    MW: 61918 Da    PI: 9.6576
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01635s010.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.53.4e-11553856
                    -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ q+++Le+++ +++yp+ +e+e++ k+lg t + V+ WF+ rR + k
  Csa01635s010.2  5 SPVQVQALEAFYFEQMYPTPKEMEDMGKSLGFTVKEVSGWFKRRRSRGK 53
                    788*******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.2E-7159IPR001356Homeobox domain
PROSITE profilePS5007112.05155IPR001356Homeobox domain
SuperFamilySSF466896.84E-10356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-10354IPR009057Homeodomain-like
CDDcd000861.59E-8351No hitNo description
PfamPF000461.0E-8553IPR001356Homeobox domain
PROSITE profilePS5082712.501349408IPR018501DDT domain
SMARTSM005711.1E-10349408IPR018501DDT domain
PfamPF027911.1E-9350403IPR018501DDT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MKRKSPVQVQ ALEAFYFEQM YPTPKEMEDM GKSLGFTVKE VSGWFKRRRS RGKGMISPAD  60
DVVGAGNPQS YNTSRIRSSR CDFRAGVKKR SSVETRKANC QELFTSQHIL AKIFRKDGPP  120
LGSEFDHLSS GARKASWLGT SSVEQQKQRM TRKRKISELM DHTSQDCVQE NATVMKHGIG  180
KGLMTVWRVM NPNRRDVSPC VGLLDERATL PQSSARNPPH QKKKQSQLAS ILKQKLLQKR  240
STEKKRRSIN REVELNKDET QREFKENCEL AVDREVFKET CQTTSILVDD EELEMRERQE  300
RGNPLTCSCH HSSSGSHGCF LCKDLLPKFP PNSVQMRVPF GLHPWNSFPE TVKKLFKVVH  360
FLYTYSVTLD ICPFTLDEFT RAFHDKDSLL LGKIHLSLLK LLLLDVETEL QRGSFSNLSI  420
SCKFLALLQS VESQILILDL WKDSLNSLTW TEILRQILVA AGYGSVKGAV QSEELSKERR  480
LMKNYGLHIG TLKGELFRVL NKQGNNGLKI SELANSPEVA GLNLATAQEE QENSICSTLA  540
SDITLF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01635s010.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496401e-110AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615341e-110AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026871e-110CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445475.10.0PREDICTED: homeobox-DDT domain protein RLT3-like, partial
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A178UY470.0A0A178UY47_ARATH; Uncharacterized protein
STRINGXP_010497108.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator