PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01635s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HB-other | ||||||||
Protein Properties | Length: 552aa MW: 62644.9 Da PI: 9.6576 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.5 | 3.5e-11 | 5 | 53 | 8 | 56 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ q+++Le+++ +++yp+ +e+e++ k+lg t + V+ WF+ rR + k Csa01635s010.1 5 SPVQVQALEAFYFEQMYPTPKEMEDMGKSLGFTVKEVSGWFKRRRSRGK 53 788*******************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.2E-7 | 1 | 59 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.05 | 1 | 55 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-10 | 3 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 3 | 54 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.67E-8 | 3 | 51 | No hit | No description |
Pfam | PF00046 | 1.0E-8 | 5 | 53 | IPR001356 | Homeobox domain |
SMART | SM00571 | 1.0E-6 | 349 | 414 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 9.797 | 355 | 414 | IPR018501 | DDT domain |
Pfam | PF02791 | 5.7E-8 | 363 | 409 | IPR018501 | DDT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MKRKSPVQVQ ALEAFYFEQM YPTPKEMEDM GKSLGFTVKE VSGWFKRRRS RGKGMISPAD 60 DVVGAGNPQS YNTSRIRSSR CDFRAGVKKR SSVETRKANC QELFTSQHIL AKIFRKDGPP 120 LGSEFDHLSS GARKASWLGT SSVEQQKQRM TRKRKISELM DHTSQDCVQE NATVMKHGIG 180 KGLMTVWRVM NPNRRDVSPC VGLLDERATL PQSSARNPPH QKKKQSQLAS ILKQKLLQKR 240 STEKKRRSIN REVELNKDET QREFKENCEL AVDREVFKET CQTTSILVDD EELEMRERQE 300 RGNPLTCSCH HSSSGSHGCF LCKDLLPKFP PNSVQMRVPF GLHPWNSFPE TVKKLFKVLL 360 SWQVVHFLYT YSVTLDICPF TLDEFTRAFH DKDSLLLGKI HLSLLKLLLL DVETELQRGS 420 FSNLSISCKF LALLQSVESQ ILILDLWKDS LNSLTWTEIL RQILVAAGYG SVKGAVQSEE 480 LSKERRLMKN YGLHIGTLKG ELFRVLNKQG NNGLKISELA NSPEVAGLNL ATAQEEQENS 540 ICSTLASDIT LF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01635s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049640 | 1e-110 | AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project). | |||
GenBank | AL161534 | 1e-110 | AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34. | |||
GenBank | CP002687 | 1e-110 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445475.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT3-like, partial | ||||
Swissprot | F4JRF5 | 0.0 | RLT3_ARATH; Homeobox-DDT domain protein RLT3 | ||||
TrEMBL | A0A178UY47 | 0.0 | A0A178UY47_ARATH; Uncharacterized protein | ||||
STRING | XP_010497108.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9638 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |