PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa00579s030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24797.2 Da PI: 10.3812 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.2e-13 | 54 | 96 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ eE ++l++a+k+lG++ W++Iar++ gRt+ ++ + w k+ Csa00579s030.1 54 AFSDEENKKLLEAHKELGSK-WSKIARRFH-GRTDREVHNQWDKL 96 79******************.*********.***********887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 34 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.17E-20 | 35 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.363 | 47 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-10 | 51 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.73E-8 | 54 | 97 | No hit | No description |
Pfam | PF00249 | 3.3E-11 | 54 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-14 | 60 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MNALLRRSDK VKEKQVRRWT FLEDLKLKGL VAICAKTCRS RWFNHLDPRI NDDAFSDEEN 60 KKLLEAHKEL GSKWSKIARR FHGRTDREVH NQWDKLMKQK LKKPSTPPHQ VTANDKTEGF 120 IDSVRDENTK INNSSLKIPQ EETTNYLRSK HLTEAMEYSA RHHHFSNLIP TVSLAMFTPH 180 VPISQPSSSS LPSKANDTKA KIPPKFIDFL GVGDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-17 | 11 | 101 | 22 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa00579s030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010496521.1 | 1e-160 | PREDICTED: transcription factor MYB35-like | ||||
TrEMBL | D7MJE0 | 1e-49 | D7MJE0_ARALL; Uncharacterized protein | ||||
STRING | XP_010496521.1 | 1e-159 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19099 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 2e-32 | myb domain protein 110 |