PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00532s240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 191aa    MW: 21730.5 Da    PI: 9.9404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00532s240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-162673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l +++  +G g W+++a+  g++Rt+k+c++rw++yl
   Csa00532s240.1 26 KGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 73
                     79********************************************97 PP
2Myb_DNA-binding21.45.7e-07881072646
                      HHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  26 tIartmgkgRtlkqcksrwqk 46 
                      +Ia++++ gRt++++k++w++
   Csa00532s240.1  88 LIAKHLP-GRTDNEIKNFWRT 107
                      7******.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-211883IPR009057Homeodomain-like
PROSITE profilePS5129419.0162177IPR017930Myb domain
SMARTSM007179.4E-122575IPR001005SANT/Myb domain
PfamPF002491.7E-142673IPR001005SANT/Myb domain
SuperFamilySSF466899.38E-2226108IPR009057Homeodomain-like
CDDcd001671.17E-82873No hitNo description
SMARTSM007173178111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-888108IPR009057Homeodomain-like
PROSITE profilePS500904.50789109IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
METMKKKGRG KATITSQKEE EGTVRKGPWT MEEDFILFNY ILNHGEGLWN SVAKASGLKR  60
TGKSCRLRWL NYLRPDVRRG NITAEEQLIA KHLPGRTDNE IKNFWRTKIQ RHMKVKVSSE  120
NMMNHHRSGN SQSSGMTTTD QGSSGKAIDM AESFSPATTT FNVVEQSNEN YWNVEDLWPV  180
HLLNGDHHVI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-152611127126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00532s240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180911e-111AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankBT0055741e-111BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496298.11e-137PREDICTED: transcription factor MYB57-like
SwissprotQ9SSA11e-118MYB57_ARATH; Transcription factor MYB57
TrEMBLR0I8T71e-127R0I8T7_9BRAS; Uncharacterized protein
STRINGXP_010496298.11e-136(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-121myb domain protein 57