PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00495s020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 332aa    MW: 36993.6 Da    PI: 6.2436
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00495s020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box261.9e-08345440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++ +++ ++C++++  lC +C ++ H+       Ht++
  Csa00495s020.1  3 AQCDYCGTEKALIYCKSDSAKLCINCDVNVHSAnplfqrHTRS 45
                    68******99*********************668888888875 PP
2CCT54.73.5e-19277320144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYk+ +++R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Csa00495s020.1 277 RDEAKKRYKQNKSRRMFGKQIRYASRKARADTRKRVKGRFVKAG 320
                     99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.082147IPR000315B-box-type zinc finger
SMARTSM003362.9E-11147IPR000315B-box-type zinc finger
PfamPF006433.1E-7345IPR000315B-box-type zinc finger
CDDcd000212.55E-7547No hitNo description
PROSITE profilePS5101713.989277319IPR010402CCT domain
PfamPF062031.0E-14277319IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEAQCDYCGT EKALIYCKSD SAKLCINCDV NVHSANPLFQ RHTRSLLREK CFLQPTVIHC  60
PNEKVSLCQG CHWTASNCNC LGHRLQNLNP YSGCPSPSDF TKIWSSVIEP TASNWVSPFD  120
DSIKINELVD WDGLSTPTQT QNLKDHSSIF FMESSLPKVI EEEECSGLDL CEGINLDDAP  180
LNFNASNDII GCSSPDQTKC YKYEGSYKED NKTGLSPLFL PALSGGNVVP SMSLSMTNIT  240
GESSPTDYQD CGISPGFLIG DSPWESNVEV TYNPKSRDEA KKRYKQNKSR RMFGKQIRYA  300
SRKARADTRK RVKGRFVKAG ENFEYDASMV M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00495s020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615411e-105AL161541.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41.
GenBankCP0026871e-105CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973381e-105Z97338.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019098154.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233790.0COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLR0GLP70.0R0GLP7_9BRAS; Uncharacterized protein
STRINGXP_010496102.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.10.0B-box type zinc finger protein with CCT domain