PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa00462s030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 316aa MW: 34827.2 Da PI: 7.5835

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa00462s030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.2	5.9e-10	24	52	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i +++++ l+ ++ Csa00462s030.1 24 KKATELSVLCGNSVGFICYGPDNDLHVWP 52 9**************************98 PP
2	SRF-TF	24.7	3e-08	248	273	25	50
HHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 25 eELSvLCdaevaviifsstgklyeys 50 ELSvLC+ v+ i +++++ l+ ++ Csa00462s030.1 248 TELSVLCGNSVCFICYGPDNDLHVWP 273 5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.32E-9	19	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-7	22	51	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-7	248	307	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-5	248	272	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MAPRLNKVGG DKNYFKQIFP TFKKKATELS VLCGNSVGFI CYGPDNDLHV WPEPQDNPQA 60 SPEIVGKFNA LSDHMRMSHA SDLFDLPYLK GLSIEELLRH LAKLNSHLVG IKQKQMTVLK 120 RRGNSKKPND HLRVSDNAAT IIPNRKVAAS SNDRLGFGES GYVFRGSHET VSSLGSSVFS 180 VSDSSPLTLG LSCGDYFPAT DNSRVIPSDL QNQSELRSSS LSFNIAPRDK SSGGDDDDLK 240 RKQVLIFTEL SVLCGNSVCF ICYGPDNDLH VWPEAQDNPR AIPEIIGKFK GLSDHKRKNH 300 ASDLYDFPNL SFIND*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa00462s030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	6e-35	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T2K10	6e-35	AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019083117.1	1e-128	PREDICTED: uncharacterized protein LOC104700767 isoform X1
Refseq	XP_019083118.1	1e-128	PREDICTED: uncharacterized protein LOC104700767 isoform X1
Refseq	XP_019083119.1	1e-128	PREDICTED: uncharacterized protein LOC104700767 isoform X2
Swissprot	Q9ZUI9	1e-48	AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBL	R0I988	3e-75	R0I988_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010424594.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11232	9	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60040.1	9e-51	AGAMOUS-like 49

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]