PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa00382s260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 199aa MW: 22340.8 Da PI: 5.741 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.1 | 1.1e-28 | 14 | 144 | 5 | 89 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssasece 74 +++ +++h kvggRdRR+Rl+ ++a ++F L+deLGf +d++t+ WLl++a+pai ++tg + Csa00382s260.1 14 TRTPKDRHLKVGGRDRRIRLPPSVAPQLFNLTDELGFQTDGETVGWLLRNAEPAIFAATGHgvsttpndvihssnnnfhnyysncnN-------- 100 56789********************************************************77444444444333333333333330........ PP TCP 75 aesssssasnsssg..........................................k 89 Csa00382s260.1 101 -------------YtihgncsytidgdnwtgvntvhhemvfpvsimkehaasscfpV 144 .............03444444444444455555554444444433333333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 24.338 | 17 | 71 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.5E-25 | 17 | 146 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDSGKEMNNM EKATRTPKDR HLKVGGRDRR IRLPPSVAPQ LFNLTDELGF QTDGETVGWL 60 LRNAEPAIFA ATGHGVSTTP NDVIHSSNNN FHNYYSNCNN YTIHGNCSYT IDGDNWTGVN 120 TVHHEMVFPV SIMKEHAASS CFPVKDKEDV SDMSSQTQPA MLPPLIHHQQ QQEQEPQPQF 180 ELGKVEMAAD EKRYVWSE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00390 | DAP | Transfer from AT3G45150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa00382s260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495849.1 | 1e-151 | PREDICTED: transcription factor TCP16-like | ||||
Swissprot | Q9M1U4 | 4e-52 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | D7LNL8 | 6e-66 | D7LNL8_ARALL; Uncharacterized protein | ||||
STRING | XP_010495849.1 | 1e-150 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15750 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 3e-53 | TCP domain protein 16 |
Publications ? help Back to Top | |||
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