PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa00382s220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 187aa MW: 20463.6 Da PI: 6.2204 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 82.3 | 1.2e-25 | 16 | 132 | 10 | 89 |
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.....eaesssssasnsssg...... 88 k T+ R RR+Rl++ ca ++F+L++eLGf++d++t+ WLl+ a+p i ++tg s s+c + ++ss++++ s g Csa00382s220.1 16 KTPTSSRDRNRRIRLPVGCASQVFQLTQELGFKTDGETVGWLLRIAEPDILAATGHgvnttS----SDCihpciNIHNSSNMNQ-LSFGnnctid 105 66789999************************************************865441....233333342222222222.1111223343 PP TCP 89 ..........................k 89 Csa00382s220.1 106 nsvhyadtsavvsqahqrenitghhgL 132 333332222222222222224444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.186 | 12 | 68 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.7E-21 | 18 | 122 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MVLRNNKNNI GGKARKTPTS SRDRNRRIRL PVGCASQVFQ LTQELGFKTD GETVGWLLRI 60 AEPDILAATG HGVNTTSSDC IHPCINIHNS SNMNQLSFGN NCTIDNSVHY ADTSAVVSQA 120 HQRENITGHH GLVSPAATMS TDYGHSTSFP ENSMPHQQPQ PQPLDDEFDE EEMGMAAQTY 180 AIPREY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa00382s220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495846.1 | 1e-140 | PREDICTED: transcription factor TCP16-like | ||||
TrEMBL | D7LNL1 | 1e-61 | D7LNL1_ARALL; Uncharacterized protein | ||||
STRING | XP_010495846.1 | 1e-139 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16163 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 8e-29 | TCP domain protein 16 |