PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012575683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 926aa MW: 104650 Da PI: 8.3921 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 781 | 800 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ XP_012575683.1 781 FSCPVCLKTFNRYNNLQMHM 800 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.68 | 91 | 104 | IPR001878 | Zinc finger, CCHC-type |
Pfam | PF07727 | 3.2E-25 | 201 | 275 | IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
CDD | cd09272 | 4.67E-15 | 273 | 310 | No hit | No description |
SuperFamily | SSF57667 | 4.72E-5 | 768 | 803 | No hit | No description |
PROSITE profile | PS50157 | 10.18 | 781 | 808 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.1E-5 | 781 | 800 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 783 | 803 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 926 aa Download sequence Send to blast |
MELHRLDESE QSNRKRKGLS LKAQTHKVKS EPETCTDDSE SETDEEPEIG MLVKKFKKFL 60 KKKGNQSRKP PNSKTKSFSK SDTNDSEVIT CYECGKSCHI RSECFKLQNR NKLVKAKGKD 120 QQPPTKRAYI AWNDNDEESS EDSEDEEANL CLMANTYSDS DSDSEVTFVS QVEPKNIKEA 180 LLDNDWIISM QEELNQFERN KVSILVPKPE DKHVIGTRWV FRNKMDENGV INRNKARLVA 240 KGYNQEEGID YDETYAPVAK LEAIRILLAY AYRKNTSGIC HLLGNSLVSW HSKKQNSVAL 300 STAEAEIVAA GIKQTSDKSP SSYTSSGRTP SPPPPAKRVS IPTHKIMAKD KGKAIATDLG 360 KSKKRKIPQS EKLMGDAMKE PSQKKKKTIS SPQPKKPQVN LLSCSLEIYP RLIRAFYSTF 420 ILTDTGFEAE VKGKKISMTF EEFSKLLGLP FFGEAVDGRT DHDSTNDAWE TSVDRHITIP 480 DLMIEVPRSR NHAVVQRLDI ILLWGLYKEF KMSWAWIVLV NMVESAQGKL MLPYPQLITK 540 ILRHFQVSCV NEESIKTTLI FGESIVNQMQ LKRINGIWTR AQPSAEQPEP AETQSEVLAK 600 LLELMESQVA HSARVEASLR KLQATLNLVV QDVAAIQEYL GLKMSFEDIV DIGNQATEEP 660 NPTNLDSTKP HGEETLAEAN TTVSTSPIDI DMNSNTNDLQ PLPLLSSFLG STSQEPLHQN 720 ENHKSCYNNR AEDVTVALHI GLPDNSIESP IDNGFVNVPT QVPNNYWIPT HEQILIGFSH 780 FSCPVCLKTF NRYNNLQMHM WGHGSQYRRG PDSLKRTHPR PLLDIPCYCC SKGCKNNIEH 840 PRAKPLKDFR TLQTHYKRKH GSKPFTCRKC GKPLAVKGYW RTYEKNCGKR WLCICGSDFK 900 HERSLKDHIK AFGFGHSPFS SSSDGI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 811 | 816 | DSLKRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012575683.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP700160 | 1e-119 | FP700160.1 Medicago truncatula chromosome 5 clone mtf83-100f22, COMPLETE SEQUENCE. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 1e-87 | C2H2 family protein |