PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575683.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 926aa    MW: 104650 Da    PI: 8.3921
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05781800120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  nL+ H+
  XP_012575683.1 781 FSCPVCLKTFNRYNNLQMHM 800
                     89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6891104IPR001878Zinc finger, CCHC-type
PfamPF077273.2E-25201275IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
CDDcd092724.67E-15273310No hitNo description
SuperFamilySSF576674.72E-5768803No hitNo description
PROSITE profilePS5015710.18781808IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-5781800IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280783803IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MELHRLDESE QSNRKRKGLS LKAQTHKVKS EPETCTDDSE SETDEEPEIG MLVKKFKKFL  60
KKKGNQSRKP PNSKTKSFSK SDTNDSEVIT CYECGKSCHI RSECFKLQNR NKLVKAKGKD  120
QQPPTKRAYI AWNDNDEESS EDSEDEEANL CLMANTYSDS DSDSEVTFVS QVEPKNIKEA  180
LLDNDWIISM QEELNQFERN KVSILVPKPE DKHVIGTRWV FRNKMDENGV INRNKARLVA  240
KGYNQEEGID YDETYAPVAK LEAIRILLAY AYRKNTSGIC HLLGNSLVSW HSKKQNSVAL  300
STAEAEIVAA GIKQTSDKSP SSYTSSGRTP SPPPPAKRVS IPTHKIMAKD KGKAIATDLG  360
KSKKRKIPQS EKLMGDAMKE PSQKKKKTIS SPQPKKPQVN LLSCSLEIYP RLIRAFYSTF  420
ILTDTGFEAE VKGKKISMTF EEFSKLLGLP FFGEAVDGRT DHDSTNDAWE TSVDRHITIP  480
DLMIEVPRSR NHAVVQRLDI ILLWGLYKEF KMSWAWIVLV NMVESAQGKL MLPYPQLITK  540
ILRHFQVSCV NEESIKTTLI FGESIVNQMQ LKRINGIWTR AQPSAEQPEP AETQSEVLAK  600
LLELMESQVA HSARVEASLR KLQATLNLVV QDVAAIQEYL GLKMSFEDIV DIGNQATEEP  660
NPTNLDSTKP HGEETLAEAN TTVSTSPIDI DMNSNTNDLQ PLPLLSSFLG STSQEPLHQN  720
ENHKSCYNNR AEDVTVALHI GLPDNSIESP IDNGFVNVPT QVPNNYWIPT HEQILIGFSH  780
FSCPVCLKTF NRYNNLQMHM WGHGSQYRRG PDSLKRTHPR PLLDIPCYCC SKGCKNNIEH  840
PRAKPLKDFR TLQTHYKRKH GSKPFTCRKC GKPLAVKGYW RTYEKNCGKR WLCICGSDFK  900
HERSLKDHIK AFGFGHSPFS SSSDGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1811816DSLKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575683.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP7001601e-119FP700160.1 Medicago truncatula chromosome 5 clone mtf83-100f22, COMPLETE SEQUENCE.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-87C2H2 family protein