PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575506.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 925aa    MW: 102487 Da    PI: 7.0994
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.7e-18375474198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_012575506.1 375 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 467
                     89**************************555567778***************9989999999***9.********************876.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_012575506.1 468 LIMGFRK 474
                     7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-29367483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-18372474IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-21373474No hitNo description
PROSITE profilePS5086311.166375476IPR003340B3 DNA binding domain
PfamPF023621.7E-15375474IPR003340B3 DNA binding domain
SMARTSM010191.2E-19375475IPR003340B3 DNA binding domain
PROSITE profilePS5105013.224604654IPR011124Zinc finger, CW-type
PfamPF074961.5E-9609651IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MHFGASFLSP FLLFCMHTPS LFLSLLLTLS LYSSFLSGHR RFNSLSTSSP PVVELKLKME  60
SKCCMNMTCA TSTSIRWRKG WLLRSGEFAD LCDKCGAAYE QSAFCDMFHA NDSGWRECTS  120
CGKHLHCGCV ASRSQLEILD TGGVSCITCA SNSGLHPIAS TEKVNESGTS KIINVSAQQS  180
ISLANQLNVR DMQVGNYGEN DGLRCWLKPH KVDTDGPSTV IKPEVLPSVG EFGSTLISQF  240
HRESNGSSRT ANAENCKADD VQDIYESLAP TNLSMTVAAP LVNLNPFHNV LVDEREQSKA  300
SPSLLLGSRS RHLLPKPPRP TLSSGLEANA GTVSQIRIAR PPTEGRGSPR YWPRITDQEL  360
QQISGDSNST IVPLFEKMLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL PLRIQDVKGK  420
EWMFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLIM GFRKATDSAS  480
VQSQKGCSEN HLNALSNRWN SAGGDMDWHN VEMPQSRKRD GLCLPPILVP EKKKTRNIGS  540
KSKRLLIDSQ DALELKLTWE EAQDLLCPPL AVKPSVVMIE DHLFEEYEEP PVFGKKSIFV  600
VRSTGINEQW TQCDSCLKWR KLPVDVLIPP NWTCMENLWD QSRCSCAAPN ELNPRELDNL  660
LRMNKEFKKQ RLAAASQRSA LERESSGLDA LSNAAIVGDD ASDSGRTPVV TTTRHPRHRP  720
GCSCIVCIQP PSGKGKHKPT CTCNVCMTVK RRFKTLMMRK KKRQSEREAE IAQKNMLSWR  780
TKDESEGDST SRHLTPVGGS ENQATVLNEL DSRSQDHVSE AAKGQLDLNC QPDREVMQSG  840
QNTLSMMTLL EEAILPLETY LKQNGLSSLI SEQQTNSDTN VQAQTTNESE GRQNEDCHTA  900
SAVHEQEGSP KENSGQERDQ NNSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-693534832132B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1749760KRRFKTLMMRKK
2749762KRRFKTLMMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1475370.0AC147537.39 Medicago truncatula clone mth2-133k2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027186450.10.0B3 domain-containing transcription repressor VAL2 isoform X5
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A3Q7YBC80.0A0A3Q7YBC8_CICAR; B3 domain-containing transcription repressor VAL2 isoform X5
STRINGXP_004514737.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]