PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575505.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 961aa    MW: 106343 Da    PI: 7.0485
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.36e-18375474198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_012575505.1 375 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 467
                     89**************************555567778***************9989999999***9.********************876.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_012575505.1 468 LIMGFRK 474
                     7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-29367481IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-18372474IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-21373474No hitNo description
PfamPF023621.8E-15375474IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166375476IPR003340B3 DNA binding domain
SMARTSM010191.2E-19375475IPR003340B3 DNA binding domain
PROSITE profilePS5105013.224640690IPR011124Zinc finger, CW-type
PfamPF074961.5E-9645687IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MHFGASFLSP FLLFCMHTPS LFLSLLLTLS LYSSFLSGHR RFNSLSTSSP PVVELKLKME  60
SKCCMNMTCA TSTSIRWRKG WLLRSGEFAD LCDKCGAAYE QSAFCDMFHA NDSGWRECTS  120
CGKHLHCGCV ASRSQLEILD TGGVSCITCA SNSGLHPIAS TEKVNESGTS KIINVSAQQS  180
ISLANQLNVR DMQVGNYGEN DGLRCWLKPH KVDTDGPSTV IKPEVLPSVG EFGSTLISQF  240
HRESNGSSRT ANAENCKADD VQDIYESLAP TNLSMTVAAP LVNLNPFHNV LVDEREQSKA  300
SPSLLLGSRS RHLLPKPPRP TLSSGLEANA GTVSQIRIAR PPTEGRGSPR YWPRITDQEL  360
QQISGDSNST IVPLFEKMLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL PLRIQDVKGK  420
EWMFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLIM GFRKATDSAS  480
VQETFPSKMH NGSHSSETSY SGVYVNVPIL SGYSGLLQSQ KGCSENHLNA LSNRWNSAGG  540
DMDWHNVEMP QSRKRDGLCL PPILVPEKKK TRNIGSKSKR LLIDSQDALE LKLTWEEAQD  600
LLCPPLAVKP SVVMIEDHLF EEYEEPPVFG KKSIFVVRST GINEQWTQCD SCLKWRKLPV  660
DVLIPPNWTC MENLWDQSRC SCAAPNELNP RELDNLLRMN KEFKKQRLAA ASQRSALERE  720
SSGLDALSNA AIVGDDASDS GRTPVVTTTR HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN  780
VCMTVKRRFK TLMMRKKKRQ SEREAEIAQK NMLSWRTKDE SEGDSTSRHL TPVGGSENQA  840
TVLNELDSRS QDHVSEAAKG QLDLNCQPDR EVMQSGQNTL SMMTLLEEAI LPLETYLKQN  900
GLSSLISEQQ TNSDTNVQAQ TTNESEGRQN EDCHTASAVH EQEGSPKENS GQERDQNNSL  960
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-693534822131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1785796KRRFKTLMMRKK
2785798KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1475370.0AC147537.39 Medicago truncatula clone mth2-133k2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514737.10.0B3 domain-containing transcription repressor VAL2 isoform X2
TrEMBLA0A1S2Z4520.0A0A1S2Z452_CICAR; B3 domain-containing transcription repressor VAL2 isoform X2
STRINGXP_004514737.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1