PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575386.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 276aa    MW: 30714 Da    PI: 10.1928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016929323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk Fs+      H+++H
  XP_012575386.1  9 CGICGKFFSSGKAIGGHMKSH 29
                    **********99999999998 PP
2zf-C2H212.40.00048234256123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C + F++      H ++H
  XP_012575386.1 234 FQCPYCYRAFKSAKAVGGHKKVH 256
                     89**********99888888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.1729IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058734IPR007087Zinc finger, C2H2
PfamPF139129.8E-6929IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
PfamPF139121.1E-10181206IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388182209IPR007087Zinc finger, C2H2
SMARTSM003550.18182204IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.91E-9182256No hitNo description
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39234256IPR007087Zinc finger, C2H2
SMARTSM003550.16234256IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-5234256IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEKNKGRDCG ICGKFFSSGK AIGGHMKSHL VILPIPPKPE TMNQALDNSA DLTQPPIQPT  60
SSLTSLPEKK QTHDFRSMKR NFFTFSANSN RENEFVFIPK IPTRKRSKYC SKLNAVDNTK  120
TQLEQTKSIL DPVALVIAEI LSTIKSKERN KQIINETNKM KAKDSAGSND DSLVQAHSRA  180
RFICDMCGKM FGSYQALGGH KANHKKTKNP SQEGGYSDDE KSDNNGDFTD QKLFQCPYCY  240
RAFKSAKAVG GHKKVHFPNT MVANARTSAI DFLGVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575386.10.0zinc finger protein ZAT4
TrEMBLA0A1S3EKB70.0A0A1S3EKB7_CICAR; zinc finger protein ZAT4
STRINGXP_004514533.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1538968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.16e-23C2H2-like zinc finger protein