PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_012575346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 216aa MW: 24381.2 Da PI: 5.3642 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.8 | 5.7e-25 | 5 | 80 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+++yfF+kr++ky++g+r+ r + g+Wkatg d+++ + +g+ +g kktLvfy+g+ + g kt+W+m+ey++ XP_012575346.1 5 EGEQHTYFFTKRNRKYPKGERPDRgVRGFGFWKATGIDHPIND-NGTIIGFKKTLVFYRGNPKGGDKTNWIMQEYTI 80 467799******************77779*************9.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.488 | 1 | 107 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-28 | 4 | 105 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-10 | 10 | 80 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MYKREGEQHT YFFTKRNRKY PKGERPDRGV RGFGFWKATG IDHPINDNGT IIGFKKTLVF 60 YRGNPKGGDK TNWIMQEYTI NIENIESTST TPTSQLNNWV ICKIYEHKRG DAIGKAKKRK 120 HENENLEGEN MEEVIPTPNS SPSTPLTPTA TSPPLSPSTP PTPAATSPPP PLLPEMSSND 180 IDMANFQNGD YDISSILNFD QNLENEMFDI DQLLDS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-26 | 6 | 108 | 69 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-26 | 6 | 108 | 69 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-26 | 6 | 108 | 69 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-26 | 6 | 108 | 69 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-26 | 6 | 108 | 72 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-26 | 6 | 108 | 72 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-26 | 6 | 108 | 72 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-26 | 6 | 108 | 72 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-26 | 6 | 108 | 72 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-26 | 6 | 108 | 72 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-26 | 6 | 108 | 72 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-26 | 6 | 108 | 72 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-26 | 6 | 108 | 69 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-26 | 6 | 108 | 69 | 166 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_012575346.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012575346.1 | 1e-160 | NAC domain-containing protein 1-like | ||||
TrEMBL | A0A1S3EK77 | 1e-159 | A0A1S3EK77_CICAR; NAC domain-containing protein 1-like | ||||
STRING | XP_004514442.1 | 1e-159 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17306 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27410.2 | 7e-29 | NAC family protein |