PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012575345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 149aa MW: 17277.7 Da PI: 9.9222 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.5 | 6e-41 | 5 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 lppG++F Ptd el+++yL++k++++++ + i +vd+y+ P++L + +++e+++yfF+kr++ky++g+r+ r + g+Wkatg d+++ XP_012575345.1 5 LPPGYKFLPTDVELIKYYLQPKIANHHIIA-GPIYDVDVYQNSPNNLYaMYKREGEQHTYFFTKRNRKYPKGERPDRgVRGFGFWKATGIDHPIN 98 79*************************888.88**************833444466789******************77779************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+ +g kktLvfy+g+ + g kt+W+m+ey++ XP_012575345.1 99 D-NGTIIGFKKTLVFYRGNPKGGDKTNWIMQEYTI 132 9.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-44 | 3 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.138 | 5 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-22 | 6 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MLQLLPPGYK FLPTDVELIK YYLQPKIANH HIIAGPIYDV DVYQNSPNNL YAMYKREGEQ 60 HTYFFTKRNR KYPKGERPDR GVRGFGFWKA TGIDHPINDN GTIIGFKKTL VFYRGNPKGG 120 DKTNWIMQEY TINIENIEST STTPTSKVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-32 | 5 | 132 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012575345.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513361.2 | 1e-105 | NAC domain-containing protein 41-like | ||||
TrEMBL | A0A1S2Z1L1 | 1e-103 | A0A1S2Z1L1_CICAR; NAC domain-containing protein 41-like | ||||
STRING | XP_004514441.1 | 3e-98 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17306 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 4e-36 | NAC family protein |