PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012575300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 1435aa MW: 165379 Da PI: 7.7605 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.9 | 3e-07 | 207 | 226 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC++ H XP_012575300.1 207 CPFHLKTGACRFGERCSRVH 226 ******************99 PP | |||||||
2 | zf-CCCH | 27.3 | 6.4e-09 | 336 | 363 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++G tC++G C+F+H+ XP_012575300.1 336 WKVAICGEYMKSGykTCSHGTACNFIHC 363 899************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.465 | 201 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.99 | 202 | 228 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-5 | 207 | 226 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 1.2E-34 | 207 | 226 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 1.2E-34 | 226 | 246 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50102 | 10.48 | 233 | 333 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 1.3E-23 | 233 | 331 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
CDD | cd12540 | 3.57E-48 | 234 | 332 | No hit | No description |
SMART | SM00361 | 2.8E-4 | 261 | 329 | IPR003954 | RNA recognition motif domain, eukaryote |
PRINTS | PR01848 | 1.2E-34 | 262 | 277 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 2.86E-14 | 265 | 333 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 1.2E-34 | 290 | 312 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 1.2E-34 | 317 | 341 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 10.502 | 335 | 365 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 335 | 364 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 336 | 363 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 1.2E-34 | 355 | 367 | IPR009145 | U2 auxiliary factor small subunit |
Gene3D | G3DSA:3.30.200.20 | 1.4E-35 | 760 | 820 | No hit | No description |
SuperFamily | SSF56112 | 2.56E-91 | 868 | 1166 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 1.4E-35 | 868 | 983 | No hit | No description |
CDD | cd07840 | 2.97E-138 | 874 | 1158 | No hit | No description |
PROSITE profile | PS50011 | 45.22 | 874 | 1158 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 5.2E-69 | 874 | 1158 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 7.7E-90 | 874 | 1158 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 880 | 903 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 9.2E-54 | 984 | 1182 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 994 | 1006 | IPR008271 | Serine/threonine-protein kinase, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1435 aa Download sequence Send to blast |
MGMEEESERK REVGSRKEKR KAAKKMRRKK RRQENAEMAR LEEEARLNDP EEQRKMLLLE 60 QQEAERMQRD RIAFEESERA WMIKHQLLLQ QQLEDADNNN NNNNNNNNNN NNNGVEEEES 120 EKEEDEDDGP PEIIWRGNEI IIKKKKKKAN SLLQRHQEHH ECDSNNRPTS NPFPPESPSQ 180 PHSNSPTLEN VAQQLPNFGT ELDKAHCPFH LKTGACRFGE RCSRVHFYPD KSSTLLIKNM 240 YNGPGLAWEQ DEGLEYTEEE VEFCFKEFYD DVHTEFLKFG ELVNFKVCKN GSFHLRGNVY 300 VQYKLLDSAL RAYNSVNGRY FAGKQVSCKF VNLTRWKVAI CGEYMKSGYK TCSHGTACNF 360 IHCFRNPGGD YEWADSDKPP PNFWVKQMAA LFGHSDDYEI SRVHGNLCVL NPSSNVSKTD 420 SDRYHSRRSR SRELGQLNGG RSGRRIQEDE KKQRTPDEER NTNHKRKCRN GTPDTDTEWS 480 EEVDREKYHE HTRESSFNRN RDDDSRRHEE YSDVNWVNRD SEKQHDRKGR SSRKWNQDSR 540 DWIYEAGSDE DRVRRRHHSS QRKGSRHQSR DNRNRTDESE SDEDRAHEEY SDVDWDTTIR 600 HHENQHDEKG RNSQIYETES DEDRHRKRYY RSQMKEARHR SRDNSYVTDE SESDKDREME 660 TQHNYSRKKS RHKRSGLQDY RKDCDNENDK VDGDWSQGES DPQAHHHKKK RFHIWSTPGS 720 EFLSFQQQFV ISFGDLSIGI GKSANEYVAE NHRRELKAKR SSSSSKHLIV NNNNNNNNDA 780 TTHLISNTYR DSSDENENEN ENENNASEKV VSKRIITTTS TTTTTTTTSS VSVGVISKGF 840 QIKSSLVVAG WPSWLTAVAG EAISGWIPRR ADSFHKLDKI GQGTYSSVYR ARDLETNKIV 900 ALKKVKFANI DPESVRFMAR EIILLRRLDH PNVMKLQGMI TSTLSGSLYL IFEYMDHDLS 960 GLAAIPGVNF TQPQIKCYMQ QLLRGLEHCH SRGVMHRDIK GSNLLLDNNG NLKIADFGLA 1020 TSFQPSQEQP LTSRVVTLWY RPPELLLGAT SYGVAVDLWS AGCILAELFA GKPIMPGRTE 1080 VEQLHKIFKL CGSPSEDYWK KSKLPHATIF KPQQPYKRVV SETFKDFPSS ALSLLEVLLA 1140 IEPKDRGTAS STLQNEFFTS NPLPCDPTTL PKYPPSKELD VKFREEDARR RRTANKGHGQ 1200 ESVGRNFKES KVVPAPEANV NFQASIEKRQ GQCNSKCVSE KYNPEEEGGY GFPLGPVKSK 1260 AQNIFSHSGQ SMHPSAYGSS CNMNLRGEDV LIGPDRVFTS RNSELRKQNS YWHGSTAKLS 1320 RFSNSVAVRG DSRFDMSGDC SLNSQWQEDH FDMRYSHLAN GESSQLLDGT KHSRKEEFHL 1380 LGKDRSMGYA SKNSHLNFSG PLLPSDDDLE EILKEHERQI QQAVRKARLN KKAGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4nst_A | 3e-82 | 860 | 1197 | 1 | 342 | Cyclin-dependent kinase 12 |
4nst_C | 3e-82 | 860 | 1197 | 1 | 342 | Cyclin-dependent kinase 12 |
6ckx_A | 3e-82 | 860 | 1197 | 1 | 342 | Cyclin-dependent kinase 12 |
6ckx_C | 3e-82 | 860 | 1197 | 1 | 342 | Cyclin-dependent kinase 12 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 29 | RKREVGSRKEKRKAAKKMRRKK |
2 | 8 | 30 | RKREVGSRKEKRKAAKKMRRKKR |
3 | 15 | 32 | RKEKRKAAKKMRRKKRRQ |
4 | 16 | 29 | KEKRKAAKKMRRKK |
5 | 23 | 31 | KKMRRKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012575300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140549 | 1e-149 | AC140549.12 Medicago truncatula clone mth2-28o14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027191858.1 | 0.0 | LOW QUALITY PROTEIN: uncharacterized protein LOC101495256 | ||||
TrEMBL | A0A3Q7XUI0 | 0.0 | A0A3Q7XUI0_CICAR; LOW QUALITY PROTEIN: uncharacterized protein LOC101495256 | ||||
STRING | XP_004485426.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-133 | C3H family protein |