PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012575155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WOX | ||||||||
Protein Properties | Length: 409aa MW: 45444.7 Da PI: 7.9294 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.4e-18 | 55 | 115 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_012575155.1 55 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 115 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 112.1 | 3e-36 | 54 | 116 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k XP_012575155.1 54 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 116 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-7 | 41 | 114 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-12 | 51 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.511 | 51 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-9 | 53 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.62E-8 | 54 | 116 | No hit | No description |
Pfam | PF00046 | 2.2E-15 | 55 | 115 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPACNP HHQWQHDINS SLISSSCHRT PYSSEGCEER SPEPKPRWNP 60 KPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKLRHL 120 QNQNSSKNQQ NILNQEPPTQ QQNPNPISSS LPQITPPSSS SSSSEKSPPK EIIPSKVFSL 180 GFSNINDVVP NSPTTSVNQT YLHSQNETTL LPPPPQQQQV ASATNETNFF FPMQQHGQGI 240 VLPNNVVTSQ GFCFSELSNM VHAQPHNTGH CTSFLLSEIM NHGANSSKKD QDQDNKSVKI 300 MHQIPHFNFC FTPTTSTTTV VPPTTSSTIT VPSPIISHAQ GHGETGVTAA RSMVFINDVA 360 FEVASGPFNV REAFGDEAVL IHATGQPVLT NQWGVTLQSL HHGACYYLI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012575155.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485856.1 | 0.0 | WUSCHEL-related homeobox 9-like isoform X1 | ||||
TrEMBL | A0A1S2X9U6 | 0.0 | A0A1S2X9U6_CICAR; WUSCHEL-related homeobox 9-like isoform X1 | ||||
STRING | XP_004485856.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 1e-65 | homeobox-3 |