PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_012575123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 416aa MW: 45846 Da PI: 7.9269 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.9e-06 | 88 | 108 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+++ G C +GdrC++ H XP_012575123.1 88 SICKYWVN-GNCVHGDRCRYLH 108 58*****9.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.033 | 13 | 39 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.17 | 14 | 38 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.164 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 87 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-6 | 87 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 7.3E-44 | 107 | 404 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 0.0073 | 115 | 154 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.36E-44 | 116 | 163 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 0.0066 | 119 | 154 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 23.203 | 122 | 373 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 12.179 | 122 | 163 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 141 | 155 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 5.2E-7 | 141 | 155 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 4.2 | 194 | 231 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.36E-44 | 201 | 408 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 5.5E-7 | 239 | 277 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 6.8E-4 | 242 | 277 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.079 | 246 | 286 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 264 | 278 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 5.2E-7 | 264 | 278 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 2.0E-7 | 280 | 317 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0012 | 282 | 316 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.578 | 287 | 326 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 5.2E-7 | 304 | 318 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 73 | 320 | 364 | IPR001680 | WD40 repeat |
SMART | SM00320 | 320 | 367 | 404 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 416 aa Download sequence Send to blast |
MMNMKVGRSR TERISGTTCA YWLAGRCNRN PCRFLHTETS YPSTASYHNA RKFHSFSKFE 60 KSRPKHNPNT ILNRNSEKTQ VADKSSPSIC KYWVNGNCVH GDRCRYLHRW SYGDGFATLT 120 KLQGHKKLVT GIVLPVGSDK LYSGSTDGTL RTWDCNSGQC TNLMNLGAEA TSLISEGPWI 180 FVGLTKAVMA WNIQTASHFT LDGPKGRILA MTVGNDTLFA GAEDGIISAW RGSSTADSPF 240 ELVASLCDHT KSVVCLAVGG DKMLCSGSKD QSIKVWDLDT LECKMTLNAH TDAVTSLIWW 300 DNYLLSGSSD CTIHVWAATE ERTLKVIYSH NVESDVVALS GMADPEAKPI LLCSCTDNSV 360 RLYELPSFAE RGRLFAKKEV GSFETGPGGL FFTGDRTGLL MVWKWLEEPR VEAASS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 4e-21 | 98 | 367 | 7 | 323 | Tako8 |
6g6n_A | 4e-21 | 98 | 367 | 7 | 323 | Tako8 |
6g6n_B | 4e-21 | 98 | 367 | 7 | 323 | Tako8 |
6g6n_C | 4e-21 | 98 | 367 | 7 | 323 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_012575123.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513959.1 | 0.0 | zinc finger CCCH domain-containing protein 48-like | ||||
Refseq | XP_012575123.1 | 0.0 | zinc finger CCCH domain-containing protein 48-like | ||||
Swissprot | Q9FNZ2 | 1e-135 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A1S2Z2P4 | 0.0 | A0A1S2Z2P4_CICAR; zinc finger CCCH domain-containing protein 48-like | ||||
STRING | XP_004513959.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25440.1 | 1e-138 | zinc finger WD40 repeat protein 1 |