PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012575102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 28271.7 Da PI: 7.1087 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H XP_012575102.1 100 FSCNYCKRKFFSSQALGGHQNAH 122 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.98E-6 | 98 | 127 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MMIPNLNLEA ENSLEVSSQV GSNLYLQETS HDLTKDSATT SSCLTNLTKP DIDPGPVSLD 60 LTLNFINPSD EDSKETSDTN SETKAEAHAA NSALRVHRIF SCNYCKRKFF SSQALGGHQN 120 AHKRERTVAK RAMRIGMFTE RYTSLASLPL HGSSFQSLGI IEAHAAMHQK QMQSSSSMKA 180 PAAKFEKECF GAASMLMHND HDVGIFWPGS FRQIDENAGI NLRYQNAHSS NLNTIFVAKS 240 PLPPPQTSTS PDLTLRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012575102.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012575102.1 | 0.0 | zinc finger protein 4-like | ||||
TrEMBL | A0A1S3EGY8 | 0.0 | A0A1S3EGY8_CICAR; zinc finger protein 4-like | ||||
STRING | XP_004513911.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 4e-28 | zinc finger protein 4 |