PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575078.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 387aa    MW: 43821.8 Da    PI: 9.6607
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00162850123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C+k+Fs+   L  H  +H
  XP_012575078.1 28 HKCNLCDKTFSSGKALGGHKTSH 50
                    79**********99998888777 PP
2zf-C2H214.78.9e-057597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  C+k+F+++  L  H+ +H
  XP_012575078.1 75 HICLFCDKVFPSNKALYGHMILH 97
                    68******************998 PP
3zf-C2H218.27e-06259281123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  C+k+F+++  L rH+ +H
  XP_012575078.1 259 HICLFCDKVFPSNKALYRHMILH 281
                     68******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.64E-52652No hitNo description
SMARTSM003550.072850IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.392855IPR007087Zinc finger, C2H2
PfamPF139126.8E-112852IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM003550.0147597IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.26575102IPR007087Zinc finger, C2H2
PfamPF139124.2E-47597IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-77597No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-7207231No hitNo description
SMARTSM003550.12212235IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39212236IPR007087Zinc finger, C2H2
PfamPF139121.0E-7212236IPR007087Zinc finger, C2H2
PROSITE patternPS000280214235IPR007087Zinc finger, C2H2
SuperFamilySSF576678.23E-5257285No hitNo description
SMARTSM003550.0023259281IPR015880Zinc finger, C2H2-like
PfamPF138948.5E-4259281No hitNo description
PROSITE profilePS501579.868259286IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MRKKNPSPSS TYHSRVDNEK TNSSSMLHKC NLCDKTFSSG KALGGHKTSH RSKLVQPPIK  60
KHAGGNNYDD VKQEHICLFC DKVFPSNKAL YGHMILHSNR NDTCDNQQIL SAADLSKYSS  120
PISYETKKQC GKSIIDYKAI NAAQILCEIS HADPEMLKLS TNIINQINNK LVTTVKDNNK  180
SLVNTRKKNP SPSSTYHFRV DNEKTNSSSM LHKCNLCDKK FSSGKALGSH KTSYHSKLLQ  240
RPIKKHGGGN NYDDVKQKHI CLFCDKVFPS NKALYRHMIL HSNRNDTYDD QQILSAADLS  300
KYSSPISYET KKQCGKIIID YEAVNAAQIL CEMSRADLEM LNLSTDIDNQ INKKLVTTMK  360
DNNKSLVVRF KFPKDQKIFQ THHEDCN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575078.10.0zinc finger protein 2-like
TrEMBLA0A1S3EI440.0A0A1S3EI44_CICAR; zinc finger protein 2-like
STRINGXP_004513871.17e-69(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15177311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-12salt tolerance zinc finger