PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012574996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 168aa MW: 20154.6 Da PI: 10.8109 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.8 | 3.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk+nrqvtfskRr g+lKKA+EL+vLCdaeva+iifss+gkl+ yss XP_012574996.1 9 ERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSS 59 69***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.964 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.13E-39 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 1.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELCVLCD AEVALIIFSS RGKLFQYSST 60 DISKIIERYR QCRYNKLQAA NSFGHESQNI YQEYLKLKGK YESLDRRQRR RSYCHELRNY 120 VKRCITWRSL TKNWSPREWM NSQTSLLTKI AIFNCMLYKP IILNKRKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-23 | 1 | 71 | 1 | 71 | MEF2C |
5f28_B | 1e-23 | 1 | 71 | 1 | 71 | MEF2C |
5f28_C | 1e-23 | 1 | 71 | 1 | 71 | MEF2C |
5f28_D | 1e-23 | 1 | 71 | 1 | 71 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 110 | DRRQRRR |
2 | 105 | 110 | RRQRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012574996.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137289 | 3e-91 | BT137289.1 Medicago truncatula clone JCVI-FLMt-16G17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012574996.1 | 1e-121 | developmental protein SEPALLATA 1-like isoform X2 | ||||
Swissprot | P29382 | 1e-42 | SEP1_ARATH; Developmental protein SEPALLATA 1 | ||||
TrEMBL | A0A1S3EJ67 | 1e-120 | A0A1S3EJ67_CICAR; developmental protein SEPALLATA 1-like isoform X2 | ||||
STRING | XP_004513659.1 | 2e-73 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 6e-45 | MIKC_MADS family protein |