PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574921.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YA
Protein Properties Length: 232aa    MW: 25539.7 Da    PI: 10.3854
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.13e-3375131158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRhkhAl+R RgsgGrF
  XP_012574921.1  75 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHKHALNRVRGSGGRF 131
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.6E-3773134IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.23274134IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-257799IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-2877131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607999IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.0E-25108131IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKSFLFLNHP NSEFNCSPVD RNHSMAHAPY PYGDPIFAGS LVAYAPQAVN QPQMLPQMMG  60
LASTRVALPL DLAQDGPIYV NAKQYHGILR RRQSRAKLEA QNKLIKSRKP YLHESRHKHA  120
LNRVRGSGGR FLSTKQLSQS NTEFVTGNQS GSGSINKYQK EDEMESRSSK TGDNASSITT  180
CSDRTCFSGN SFNFRQPEHM FLGNSPNMGG GPPQCSGGLT FGGTKQRASV VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2275136263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574921.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182680.0JQ918268.1 Medicago truncatula nuclear transcription factor Y subunit A3 (NF-YA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574919.11e-174nuclear transcription factor Y subunit A-4-like
TrEMBLA0A1S3EHR71e-173A0A1S3EHR7_CICAR; nuclear transcription factor Y subunit A-4-like
STRINGXP_004513462.11e-173(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-43nuclear factor Y, subunit A3