PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012574747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | CPP | ||||||||
Protein Properties | Length: 604aa MW: 65694.9 Da PI: 6.8307 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.9 | 1.1e-14 | 110 | 148 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+skClk+YCeCfa+g +C+ C+C +C+N+ + XP_012574747.1 110 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVD 148 89**************************.********986 PP | |||||||
2 | TCR | 50.9 | 3.2e-16 | 194 | 233 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_012574747.1 194 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 233 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.6E-17 | 109 | 149 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.74 | 110 | 234 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.0E-11 | 111 | 146 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 194 | 235 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 197 | 232 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MAEGEGGDCG MKNVPSPAAL EFVVSASPTA ATTAWLDAPA KKLARQLDFN AMMEQSKPQL 60 QTPSLMLQKQ VSGSPLPHQT LHGSVRVGKP ESPKPRSRPN FDMKEGTPKK QKQCNCKHSK 120 CLKLYCECFA SGIYCDGCNC VNCFNNVDNE AARREAVEAT LERNPNAFRP KIASSPQGTR 180 ASSEEAGEGV ILVKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK NFEGSEERQA 240 LFHVDQNQNQ NQNNHTYIQQ AANAAITGAI GSYGFSSPPV SKKRKGQELF LWPTAKDPSI 300 SKSGQQVNHV KAPAPSSALS PASSARVGNA TLGHSPSKLK YRSLLADVIQ PHHLKELCSV 360 LVLVSGQAAK TRADQKNLME KHTEDQTETS LASSTEGQLP TQKEVDVEKA MADDCSSANQ 420 IDKISPGNSC SDGADVPKGR PMSPGTLALM CDEQDTMFMT AASPIGPTTR VCNTSSQFPC 480 GQGVTEVYAE QERAVLTQFR DFLNRVITMG EINETKCSSL ARSELENQKD PINNEIGNAS 540 TDIVHQQEAT NNGDTKNIDP SMPTTSTPVI PNDIVAENGE KINLKMEKEI LKDSYLEEYE 600 ERHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-30 | 102 | 244 | 2 | 133 | Protein lin-54 homolog |
5fd3_B | 1e-30 | 102 | 244 | 2 | 133 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012574747.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-130 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012574747.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A1S3EFY4 | 0.0 | A0A1S3EFY4_CICAR; protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
STRING | AES76818 | 0.0 | (Medicago truncatula) | ||||
STRING | AES76896 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-161 | Tesmin/TSO1-like CXC domain-containing protein |