PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012574717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 852aa MW: 96407.9 Da PI: 9.7203 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.8 | 1.6e-10 | 263 | 305 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av+ +G +W ++a+ + +R + qc +rw k XP_012574717.1 263 EWTEEEDAQLCSAVACFGESNWQSVASVLE-RRAGTQCSNRWKK 305 7*****************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 40.6 | 6e-13 | 312 | 355 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eEd++l av ++G + W+ Ia+ ++ gR qc++r+++ XP_012574717.1 312 KGSFTPEEDKRLTIAVMLFGRK-WNQIAKFVP-GRIQSQCRDRYLN 355 799*****************99.*********.***********98 PP | |||||||
3 | Myb_DNA-binding | 46 | 1.2e-14 | 365 | 405 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd++l a++++G W+++a+ ++ Rt+ qc+ rw XP_012574717.1 365 GWTEEEDLRLEAAITKYGYC-WSKVAEDVP-PRTDSQCRKRWK 405 5*****************99.*********.9**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.715 | 104 | 200 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0057 | 108 | 204 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 111 | 127 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 175 | 215 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.16E-12 | 184 | 238 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.664 | 203 | 255 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.4E-4 | 207 | 257 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 5.2E-11 | 211 | 272 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 216 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.44E-16 | 239 | 307 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.134 | 256 | 311 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-6 | 260 | 309 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.95E-8 | 263 | 307 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-16 | 269 | 318 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.53E-22 | 309 | 404 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 311 | 359 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.953 | 312 | 357 | IPR017930 | Myb domain |
CDD | cd00167 | 2.10E-7 | 314 | 357 | No hit | No description |
Pfam | PF13921 | 2.0E-13 | 315 | 374 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-19 | 319 | 362 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.164 | 358 | 412 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-12 | 362 | 410 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-16 | 363 | 408 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.83E-11 | 366 | 405 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MMPLPACLPN YRRTDQAFLR RLKLLLMLSR RIELSRNFLE VSCSRKTGNA LSLKKDPRVQ 60 LISSKKSIAT NKSKSHNKKV SAMCYGPEEN SRVANYKMVL ERFPLSLDRK KWSNKERENL 120 SKGIKQQFQE TVLQISVDRM SSECSPGDAN DMDSIIESVK GLDITPGRIR EFLPKVNWDR 180 LASMYVTGRT GAECESRWLN CEDPLINHDP WTGEEDRSLL IIIQEIGIRN WFDIAVSLAT 240 NRIPFQCLAR YQRSLNPSML NSEWTEEEDA QLCSAVACFG ESNWQSVASV LERRAGTQCS 300 NRWKKSLCPV RKGSFTPEED KRLTIAVMLF GRKWNQIAKF VPGRIQSQCR DRYLNSLDPS 360 LKWGGWTEEE DLRLEAAITK YGYCWSKVAE DVPPRTDSQC RKRWKVICPE QVSLLQEARK 420 RQKSLLACNF VDRESERPAI TLNDFIPLQM VAPSSDVSAE NLQRKRKRKS SSVHNKERSK 480 KHAEDAELCP EEVQDAVPKR ERPKRHATKA SIFSEEVQDT VPKKEKPKRQ SKKARICPEE 540 VQYIAAYGAK VKTCGGGVPF FAQNNVPKKM RSKRCAKKAP IHPEKVENIG CSDKVKVCIE 600 SKSQDGDNIT LACFLRNKSK RVKRLSKRTK NENQTSSSSR KKIVSKQVEN QIPSDDQGGF 660 SLPCGIGGTQ DLLVSKEVAS SRQVKKPEDA NAARKSEDAH NLIGDDDDDM TLNCFVRNKT 720 NKLSQTTKRR RASSSSKSKK GTILLHGNKP TLISDGSEPS LSKVVEEETV LHGGVAESEP 780 INMNVVEDKT ILHGSVAEAE PTNINVVEEE SVLHNGVAGA EPTNIHVEEE DDLLLSFLQN 840 KTRRRKRLTQ YS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-27 | 177 | 404 | 7 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-27 | 177 | 404 | 7 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 400 | 422 | RKRWKVICPEQVSLLQEARKRQK |
2 | 463 | 468 | RKRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012574717.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027193356.1 | 0.0 | uncharacterized protein LOC101490682 isoform X4 | ||||
TrEMBL | A0A3Q7Y4K5 | 0.0 | A0A3Q7Y4K5_CICAR; uncharacterized protein LOC101490682 isoform X4 | ||||
STRING | XP_004512739.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-154 | myb domain protein 4r1 |