PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574717.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 852aa    MW: 96407.9 Da    PI: 9.7203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10263305346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd +l  av+ +G  +W ++a+ +  +R + qc +rw k
   XP_012574717.1 263 EWTEEEDAQLCSAVACFGESNWQSVASVLE-RRAGTQCSNRWKK 305
                      7*****************************.***********98 PP

2Myb_DNA-binding40.66e-13312355146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eEd++l  av ++G + W+ Ia+ ++ gR   qc++r+++
   XP_012574717.1 312 KGSFTPEEDKRLTIAVMLFGRK-WNQIAKFVP-GRIQSQCRDRYLN 355
                      799*****************99.*********.***********98 PP

3Myb_DNA-binding461.2e-14365405345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eEd++l  a++++G   W+++a+ ++  Rt+ qc+ rw 
   XP_012574717.1 365 GWTEEEDLRLEAAITKYGYC-WSKVAEDVP-PRTDSQCRKRWK 405
                      5*****************99.*********.9**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.715104200IPR017877Myb-like domain
SMARTSM007170.0057108204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10111127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-10175215IPR009057Homeodomain-like
SuperFamilySSF466893.16E-12184238IPR009057Homeodomain-like
PROSITE profilePS500908.664203255IPR017877Myb-like domain
SMARTSM007172.4E-4207257IPR001005SANT/Myb domain
PfamPF139215.2E-11211272No hitNo description
Gene3DG3DSA:1.10.10.601.1E-12216268IPR009057Homeodomain-like
SuperFamilySSF466891.44E-16239307IPR009057Homeodomain-like
PROSITE profilePS5129415.134256311IPR017930Myb domain
SMARTSM007173.4E-6260309IPR001005SANT/Myb domain
CDDcd001674.95E-8263307No hitNo description
Gene3DG3DSA:1.10.10.601.3E-16269318IPR009057Homeodomain-like
SuperFamilySSF466891.53E-22309404IPR009057Homeodomain-like
SMARTSM007171.2E-11311359IPR001005SANT/Myb domain
PROSITE profilePS5129410.953312357IPR017930Myb domain
CDDcd001672.10E-7314357No hitNo description
PfamPF139212.0E-13315374No hitNo description
Gene3DG3DSA:1.10.10.609.5E-19319362IPR009057Homeodomain-like
PROSITE profilePS5129422.164358412IPR017930Myb domain
SMARTSM007176.8E-12362410IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-16363408IPR009057Homeodomain-like
CDDcd001672.83E-11366405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MMPLPACLPN YRRTDQAFLR RLKLLLMLSR RIELSRNFLE VSCSRKTGNA LSLKKDPRVQ  60
LISSKKSIAT NKSKSHNKKV SAMCYGPEEN SRVANYKMVL ERFPLSLDRK KWSNKERENL  120
SKGIKQQFQE TVLQISVDRM SSECSPGDAN DMDSIIESVK GLDITPGRIR EFLPKVNWDR  180
LASMYVTGRT GAECESRWLN CEDPLINHDP WTGEEDRSLL IIIQEIGIRN WFDIAVSLAT  240
NRIPFQCLAR YQRSLNPSML NSEWTEEEDA QLCSAVACFG ESNWQSVASV LERRAGTQCS  300
NRWKKSLCPV RKGSFTPEED KRLTIAVMLF GRKWNQIAKF VPGRIQSQCR DRYLNSLDPS  360
LKWGGWTEEE DLRLEAAITK YGYCWSKVAE DVPPRTDSQC RKRWKVICPE QVSLLQEARK  420
RQKSLLACNF VDRESERPAI TLNDFIPLQM VAPSSDVSAE NLQRKRKRKS SSVHNKERSK  480
KHAEDAELCP EEVQDAVPKR ERPKRHATKA SIFSEEVQDT VPKKEKPKRQ SKKARICPEE  540
VQYIAAYGAK VKTCGGGVPF FAQNNVPKKM RSKRCAKKAP IHPEKVENIG CSDKVKVCIE  600
SKSQDGDNIT LACFLRNKSK RVKRLSKRTK NENQTSSSSR KKIVSKQVEN QIPSDDQGGF  660
SLPCGIGGTQ DLLVSKEVAS SRQVKKPEDA NAARKSEDAH NLIGDDDDDM TLNCFVRNKT  720
NKLSQTTKRR RASSSSKSKK GTILLHGNKP TLISDGSEPS LSKVVEEETV LHGGVAESEP  780
INMNVVEDKT ILHGSVAEAE PTNINVVEEE SVLHNGVAGA EPTNIHVEEE DDLLLSFLQN  840
KTRRRKRLTQ YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-271774047155MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-271774047155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400422RKRWKVICPEQVSLLQEARKRQK
2463468RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027193356.10.0uncharacterized protein LOC101490682 isoform X4
TrEMBLA0A3Q7Y4K50.0A0A3Q7Y4K5_CICAR; uncharacterized protein LOC101490682 isoform X4
STRINGXP_004512739.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-154myb domain protein 4r1