PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574716.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 885aa    MW: 99882.7 Da    PI: 9.7397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10296338346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd +l  av+ +G  +W ++a+ +  +R + qc +rw k
   XP_012574716.1 296 EWTEEEDAQLCSAVACFGESNWQSVASVLE-RRAGTQCSNRWKK 338
                      7*****************************.***********98 PP

2Myb_DNA-binding40.56.2e-13345388146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eEd++l  av ++G + W+ Ia+ ++ gR   qc++r+++
   XP_012574716.1 345 KGSFTPEEDKRLTIAVMLFGRK-WNQIAKFVP-GRIQSQCRDRYLN 388
                      799*****************99.*********.***********98 PP

3Myb_DNA-binding45.91.3e-14398438345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eEd++l  a++++G   W+++a+ ++  Rt+ qc+ rw 
   XP_012574716.1 398 GWTEEEDLRLEAAITKYGYC-WSKVAEDVP-PRTDSQCRKRWK 438
                      5*****************99.*********.9**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.715137233IPR017877Myb-like domain
SMARTSM007170.0057141237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10144160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-10208248IPR009057Homeodomain-like
SuperFamilySSF466893.31E-12217271IPR009057Homeodomain-like
PROSITE profilePS500908.664236288IPR017877Myb-like domain
SMARTSM007172.4E-4240290IPR001005SANT/Myb domain
PfamPF139215.4E-11244305No hitNo description
Gene3DG3DSA:1.10.10.601.2E-12249301IPR009057Homeodomain-like
SuperFamilySSF466891.4E-16272340IPR009057Homeodomain-like
PROSITE profilePS5129415.134289344IPR017930Myb domain
SMARTSM007173.4E-6293342IPR001005SANT/Myb domain
CDDcd001675.89E-8296340No hitNo description
Gene3DG3DSA:1.10.10.601.3E-16302351IPR009057Homeodomain-like
SuperFamilySSF466891.7E-22342437IPR009057Homeodomain-like
SMARTSM007171.2E-11344392IPR001005SANT/Myb domain
PROSITE profilePS5129410.953345390IPR017930Myb domain
CDDcd001672.52E-7347390No hitNo description
PfamPF139212.1E-13348407No hitNo description
Gene3DG3DSA:1.10.10.601.0E-18352395IPR009057Homeodomain-like
PROSITE profilePS5129422.164391445IPR017930Myb domain
SMARTSM007176.8E-12395443IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-16396441IPR009057Homeodomain-like
CDDcd001673.61E-11399438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MMVNCEDDAT ASLSSKLPKN RSSFPPSAQA FIDAVKKNRA LQKFLRSKLI EIEAKIEENK  60
KIRDKVKLLK DFQVSCSRKT GNALSLKKDP RVQLISSKKS IATNKSKSHN KKVSAMCYGP  120
EENSRVANYK MVLERFPLSL DRKKWSNKER ENLSKGIKQQ FQETVLQISV DRMSSECSPG  180
DANDMDSIIE SVKGLDITPG RIREFLPKVN WDRLASMYVT GRTGAECESR WLNCEDPLIN  240
HDPWTGEEDR SLLIIIQEIG IRNWFDIAVS LATNRIPFQC LARYQRSLNP SMLNSEWTEE  300
EDAQLCSAVA CFGESNWQSV ASVLERRAGT QCSNRWKKSL CPVRKGSFTP EEDKRLTIAV  360
MLFGRKWNQI AKFVPGRIQS QCRDRYLNSL DPSLKWGGWT EEEDLRLEAA ITKYGYCWSK  420
VAEDVPPRTD SQCRKRWKVI CPEQVSLLQE ARKRQKSLLA CNFVDRESER PAITLNDFIP  480
LQMVAPSSDV SAENLQRKRK RKSSSVHNKE RSKKHAEDAE LCPEEVQDAV PKRERPKRHA  540
TKASIFSEEV QDTVPKKEKP KRQSKKARIC PEEVQYIAAY GAKVKTCGGG VPFFAQNNVP  600
KKMRSKRCAK KAPIHPEKVE NIGCSDKVKV CIESKSQDGD NITLACFLRN KSKRVKRLSK  660
RTKNENQTSS SSRKKIVSKQ VENQIPSDDQ GGFSLPCGIG GTQDLLVSKE VASSRQVKKP  720
EDANAARKSE DAHNLIGDDD DDMTLNCFVR NKTNKLSQTT KRRRASSSSK SKKGTILLHG  780
NKPTLISDGS EPSLSKVVEE ETVLHGGVAE SEPINMNVVE DKTILHGSVA EAEPTNINVV  840
EEESVLHNGV AGAEPTNIHV EEEDDLLLSF LQNKTRRRKR LTQYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-272104377155MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-272104377155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433455RKRWKVICPEQVSLLQEARKRQK
2496501RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512739.10.0uncharacterized protein LOC101490682 isoform X1
TrEMBLA0A1S2Z0930.0A0A1S2Z093_CICAR; uncharacterized protein LOC101490682 isoform X1
STRINGXP_004512739.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-172myb domain protein 4r1