PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012574716.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 885aa MW: 99882.7 Da PI: 9.7397 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.8 | 1.6e-10 | 296 | 338 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av+ +G +W ++a+ + +R + qc +rw k XP_012574716.1 296 EWTEEEDAQLCSAVACFGESNWQSVASVLE-RRAGTQCSNRWKK 338 7*****************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 40.5 | 6.2e-13 | 345 | 388 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eEd++l av ++G + W+ Ia+ ++ gR qc++r+++ XP_012574716.1 345 KGSFTPEEDKRLTIAVMLFGRK-WNQIAKFVP-GRIQSQCRDRYLN 388 799*****************99.*********.***********98 PP | |||||||
3 | Myb_DNA-binding | 45.9 | 1.3e-14 | 398 | 438 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd++l a++++G W+++a+ ++ Rt+ qc+ rw XP_012574716.1 398 GWTEEEDLRLEAAITKYGYC-WSKVAEDVP-PRTDSQCRKRWK 438 5*****************99.*********.9**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.715 | 137 | 233 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0057 | 141 | 237 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-10 | 144 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-10 | 208 | 248 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.31E-12 | 217 | 271 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.664 | 236 | 288 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.4E-4 | 240 | 290 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 5.4E-11 | 244 | 305 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 249 | 301 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-16 | 272 | 340 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.134 | 289 | 344 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-6 | 293 | 342 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.89E-8 | 296 | 340 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-16 | 302 | 351 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.7E-22 | 342 | 437 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 344 | 392 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.953 | 345 | 390 | IPR017930 | Myb domain |
CDD | cd00167 | 2.52E-7 | 347 | 390 | No hit | No description |
Pfam | PF13921 | 2.1E-13 | 348 | 407 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 352 | 395 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.164 | 391 | 445 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-12 | 395 | 443 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-16 | 396 | 441 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.61E-11 | 399 | 438 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence Send to blast |
MMVNCEDDAT ASLSSKLPKN RSSFPPSAQA FIDAVKKNRA LQKFLRSKLI EIEAKIEENK 60 KIRDKVKLLK DFQVSCSRKT GNALSLKKDP RVQLISSKKS IATNKSKSHN KKVSAMCYGP 120 EENSRVANYK MVLERFPLSL DRKKWSNKER ENLSKGIKQQ FQETVLQISV DRMSSECSPG 180 DANDMDSIIE SVKGLDITPG RIREFLPKVN WDRLASMYVT GRTGAECESR WLNCEDPLIN 240 HDPWTGEEDR SLLIIIQEIG IRNWFDIAVS LATNRIPFQC LARYQRSLNP SMLNSEWTEE 300 EDAQLCSAVA CFGESNWQSV ASVLERRAGT QCSNRWKKSL CPVRKGSFTP EEDKRLTIAV 360 MLFGRKWNQI AKFVPGRIQS QCRDRYLNSL DPSLKWGGWT EEEDLRLEAA ITKYGYCWSK 420 VAEDVPPRTD SQCRKRWKVI CPEQVSLLQE ARKRQKSLLA CNFVDRESER PAITLNDFIP 480 LQMVAPSSDV SAENLQRKRK RKSSSVHNKE RSKKHAEDAE LCPEEVQDAV PKRERPKRHA 540 TKASIFSEEV QDTVPKKEKP KRQSKKARIC PEEVQYIAAY GAKVKTCGGG VPFFAQNNVP 600 KKMRSKRCAK KAPIHPEKVE NIGCSDKVKV CIESKSQDGD NITLACFLRN KSKRVKRLSK 660 RTKNENQTSS SSRKKIVSKQ VENQIPSDDQ GGFSLPCGIG GTQDLLVSKE VASSRQVKKP 720 EDANAARKSE DAHNLIGDDD DDMTLNCFVR NKTNKLSQTT KRRRASSSSK SKKGTILLHG 780 NKPTLISDGS EPSLSKVVEE ETVLHGGVAE SEPINMNVVE DKTILHGSVA EAEPTNINVV 840 EEESVLHNGV AGAEPTNIHV EEEDDLLLSF LQNKTRRRKR LTQYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-27 | 210 | 437 | 7 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-27 | 210 | 437 | 7 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 433 | 455 | RKRWKVICPEQVSLLQEARKRQK |
2 | 496 | 501 | RKRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012574716.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512739.1 | 0.0 | uncharacterized protein LOC101490682 isoform X1 | ||||
TrEMBL | A0A1S2Z093 | 0.0 | A0A1S2Z093_CICAR; uncharacterized protein LOC101490682 isoform X1 | ||||
STRING | XP_004512739.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-172 | myb domain protein 4r1 |