PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574715.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 1046aa    MW: 117373 Da    PI: 6.7995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10457499346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd +l  av+ +G  +W ++a+ +  +R + qc +rw k
   XP_012574715.1 457 EWTEEEDAQLCSAVACFGESNWQSVASVLE-RRAGTQCSNRWKK 499
                      7*****************************.***********98 PP
2Myb_DNA-binding40.27.6e-13506549146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eEd++l  av ++G + W+ Ia+ ++ gR   qc++r+++
   XP_012574715.1 506 KGSFTPEEDKRLTIAVMLFGRK-WNQIAKFVP-GRIQSQCRDRYLN 549
                      799*****************99.*********.***********98 PP
3Myb_DNA-binding45.71.5e-14559599345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eEd++l  a++++G   W+++a+ ++  Rt+ qc+ rw 
   XP_012574715.1 559 GWTEEEDLRLEAAITKYGYC-WSKVAEDVP-PRTDSQCRKRWK 599
                      5*****************99.*********.9**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.516315394IPR017877Myb-like domain
SMARTSM007172.0E-4319398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10322409IPR009057Homeodomain-like
SuperFamilySSF466894.03E-12378432IPR009057Homeodomain-like
PROSITE profilePS500908.664397449IPR017877Myb-like domain
SMARTSM007172.4E-4401451IPR001005SANT/Myb domain
PfamPF139216.6E-11405466No hitNo description
Gene3DG3DSA:1.10.10.601.5E-12410461IPR009057Homeodomain-like
SuperFamilySSF466891.66E-16433501IPR009057Homeodomain-like
PROSITE profilePS5129415.134450505IPR017930Myb domain
SMARTSM007173.4E-6454503IPR001005SANT/Myb domain
CDDcd001673.60E-8457501No hitNo description
Gene3DG3DSA:1.10.10.602.2E-13462503IPR009057Homeodomain-like
SuperFamilySSF466892.07E-22503598IPR009057Homeodomain-like
SMARTSM007171.2E-11505553IPR001005SANT/Myb domain
PROSITE profilePS5129410.953506551IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-19507558IPR009057Homeodomain-like
CDDcd001671.48E-7508551No hitNo description
PfamPF139212.6E-13509568No hitNo description
PROSITE profilePS5129422.164552606IPR017930Myb domain
SMARTSM007176.8E-12556604IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-16559602IPR009057Homeodomain-like
CDDcd001671.75E-11560599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MTPRTDDYEQ DNDNLSATDC DDDDDDYGLK EDMAALARAC MVTGDEIPPP EDPLLASGDA  60
IVPFTVTADS DEDEQSDLEC LKRVQSLYQP PDSLPTPQIG LSDDDEDDFE TVRAIFKRFS  120
AYDGGGREAW AEGGQAPSLI SEQEVAKSSI SDKSDDGELC PDSQYHDNDT KLLTETCGFD  180
ETCEDDATAS LSSKLPKNRS SFPPSAQAFI DAVKKNRALQ KFLRSKLIEI EAKIEENKKI  240
RDKVKLLKDF QVSCSRKTGN ALSLKKDPRV QLISSKKSIA TNKSKSHNKK VSAMCYGPEE  300
NSRVANYKMV LERFPLSLDR KKWSNKEREN LSKGIKQQFQ ETVLQISVDR MSSECSPGDA  360
NDMDSIIESV NWDRLASMYV TGRTGAECES RWLNCEDPLI NHDPWTGEED RSLLIIIQEI  420
GIRNWFDIAV SLATNRIPFQ CLARYQRSLN PSMLNSEWTE EEDAQLCSAV ACFGESNWQS  480
VASVLERRAG TQCSNRWKKS LCPVRKGSFT PEEDKRLTIA VMLFGRKWNQ IAKFVPGRIQ  540
SQCRDRYLNS LDPSLKWGGW TEEEDLRLEA AITKYGYCWS KVAEDVPPRT DSQCRKRWKV  600
ICPEQVSLLQ EARKRQKSLL ACNFVDRESE RPAITLNDFI PLQMVAPSSD VSAENLQRKR  660
KRKSSSVHNK ERSKKHAEDA ELCPEEVQDA VPKRERPKRH ATKASIFSEE VQDTVPKKEK  720
PKRQSKKARI CPEEVQYIAA YGAKVKTCGG GVPFFAQNNV PKKMRSKRCA KKAPIHPEKV  780
ENIGCSDKVK VCIESKSQDG DNITLACFLR NKSKRVKRLS KRTKNENQTS SSSRKKIVSK  840
QVENQIPSDD QGGFSLPCGI GGTQDLLVSK EVASSRQVKK PEDANAARKS EDAHNLIGDD  900
DDDMTLNCFV RNKTNKLSQT TKRRRASSSS KSKKGTILLH GNKPTLISDG SEPSLSKVVE  960
EETVLHGGVA ESEPINMNVV EDKTILHGSV AEAEPTNINV VEEESVLHNG VAGAEPTNIH  1020
VEEEDDLLLS FLQNKTRRRK RLTQYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-273745987155MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-273745987155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1594616RKRWKVICPEQVSLLQEARKRQK
2657662RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574715.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574715.10.0uncharacterized protein LOC101490682 isoform X3
TrEMBLA0A1S3EFV40.0A0A1S3EFV4_CICAR; uncharacterized protein LOC101490682 isoform X3
STRINGXP_004512739.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-170myb domain protein 4r1