PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574477.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 523aa    MW: 59144.1 Da    PI: 7.3057
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
   XP_012574477.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding52.31.3e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
   XP_012574477.1  67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.264961IPR017930Myb domain
SuperFamilySSF466891.01E-2912108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002494.8E-151461IPR001005SANT/Myb domain
CDDcd001676.17E-111761No hitNo description
PROSITE profilePS5129425.71262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2565116IPR009057Homeodomain-like
SMARTSM007171.9E-1666114IPR001005SANT/Myb domain
PfamPF002493.1E-1567111IPR001005SANT/Myb domain
CDDcd001672.10E-1169112No hitNo description
PfamPF035014.6E-43346437IPR005326Plectin/S10, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKSN  120
SNSAPSSITS TVNAPSTVDH HHPHFNYNSN QLDNYFTNQE TITTKPETLF SSTCPLFMFD  180
TSSLDHVTTT TTDTIHNARP EVLFHDTMMS LSSETWNMNH HHHHHQIQTL IPPHSAATGF  240
TAAAAIHHDT SNYLPPLIEN VENFVPIHHE VQSCNMDHEE GDVTLESLQR QELNEWVETQ  300
QQCPNFIFWE SAEEEQVLPP NSSSSNMGIT NSLSPFPSSY IATMIISEKN RREICKYLFQ  360
EGVCYAKKDF NLAKHPEIDV PNLQVIKLMQ SFKSREYVRE TFAWMHYYWF LTNDGIEFLR  420
TYLNLPSEIV PATLKKQAKP AGRPFGGPPG DRPRGPPRFE GERRFGGDRD GYRGGPRGPA  480
GEFGGDKGGA PADYRPSFGG PGGRPGFGRG AGSFGAPTSS NAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BK1e-75344498115640S ribosomal protein S10E
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574477.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1458080.0BT145808.1 Medicago truncatula clone JCVI-FLMt-2I17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574477.10.0transcription factor MYB102
TrEMBLA0A1S3EF670.0A0A1S3EF67_CICAR; transcription factor MYB102
STRINGXP_004512190.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-85myb domain protein 103