PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574386.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 304aa    MW: 34038.4 Da    PI: 8.9808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18117167256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  XP_012574386.1 117 QYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 167
                     7*******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.29E-16116176No hitNo description
PROSITE profilePS5103223.367117174IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22117174IPR016177DNA-binding domain
PfamPF008471.8E-12117167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-31117175IPR001471AP2/ERF domain
SMARTSM003802.0E-35117180IPR001471AP2/ERF domain
PRINTSPR003674.9E-10118129IPR001471AP2/ERF domain
PRINTSPR003674.9E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNGMQNRNTH ELQESSDIGS CLSNLILSSG TNTLDSIFCD IPSSTNTNYL QPFGSSNFQP  60
LGSSVYIRQR DILQKFYEET RLNNSLVPSS FTIPSLNSSL YTTNSLSSLV NPCKKKQYRG  120
VRQRHWGKWV AEIRLPQNRM RVWLGTYETA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPT  180
KLGFGDSNRL NALKSSVDAK IQAICQKVKR EKAKKIAAKK LKKNLLEKIK ISSSCSCSSS  240
SSIFDQDWAN DLFSPSVSED GVWIGNNSPN SVSTMVAEET EFEGCSLAKM PSFDFDLIWE  300
GLPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22116174160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-22114174263ATERF1
3gcc_A3e-22114174263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337711e-149CT033771.1 Medicago truncatula chromosome 5 clone mth2-15i14, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574386.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1S3EHF30.0A0A1S3EHF3_CICAR; ethylene-responsive transcription factor ERF061
STRINGXP_004511521.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]